Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48498 * 109.46890 * 240.00104 * 3 2 1 5 5 H 1.48498 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47011 * 120.00186 * 3 2 1 7 7 C 1.37872 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47001 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46895 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99463 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.46729 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46697 * 180.02562 * 14 13 12 16 16 C 1.34511 * 125.79278 * 90.00315 * 15 14 13 17 17 C 1.41386 * 106.84141 * 180.02562 * 16 15 14 18 18 C 1.34507 * 106.84010 * 0.02562 * 17 16 15 19 19 O 1.34304 * 108.42311 * 359.97438 * 18 17 16 20 20 H 0.97002 * 120.00007 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46676 * 60.00706 * 9 7 2 22 22 H 1.08998 * 109.46932 * 300.00396 * 9 7 2 23 23 H 1.09001 * 109.47378 * 60.00524 * 10 9 7 24 24 H 1.08999 * 109.47236 * 300.00426 * 10 9 7 25 25 H 1.08996 * 109.46883 * 60.00434 * 11 10 9 26 26 H 1.08998 * 109.46766 * 300.00099 * 11 10 9 27 27 H 1.00893 * 110.99867 * 303.94934 * 12 11 10 28 28 H 1.09001 * 109.46999 * 60.00464 * 13 12 11 29 29 H 1.08995 * 109.47557 * 300.00047 * 13 12 11 30 30 H 1.08994 * 109.46939 * 60.00146 * 14 13 12 31 31 H 1.09003 * 109.47242 * 299.99732 * 14 13 12 32 32 H 1.07999 * 126.58024 * 359.97438 * 16 15 14 33 33 H 1.08004 * 126.57483 * 179.97438 * 17 16 15 34 34 H 1.08004 * 125.79019 * 180.26381 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0006 13 6 1.7345 -7.3949 -0.0018 14 6 2.7595 -8.5310 -0.0017 15 6 2.0411 -9.8556 -0.0036 16 6 1.6671 -10.5462 -1.0957 17 6 1.0286 -11.7218 -0.6381 18 6 1.0500 -11.6789 0.7061 19 8 1.6647 -10.5465 1.0849 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.8719 -3.6044 0.8895 24 1 2.8719 -3.6042 -0.8905 25 1 0.8540 -5.0446 -0.8914 26 1 0.8533 -5.0450 0.8886 27 1 3.0702 -6.0365 -0.7815 28 1 1.1107 -7.4690 -0.8925 29 1 1.1087 -7.4697 0.8874 30 1 3.3838 -8.4570 0.8887 31 1 3.3850 -8.4560 -0.8913 32 1 1.8238 -10.2577 -2.1245 33 1 0.6042 -12.5037 -1.2506 34 1 0.6460 -12.4302 1.3685 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042225238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = -28.554484 kcal Electronic energy + Delta-G solvation = -14108.454902 eV Core-core repulsion = 11620.270437 eV Total energy + Delta-G solvation = -2488.184465 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.46332 -38.11004 -35.82320 -34.32940 -33.67292 -32.12082 -29.06102 -27.28833 -24.51958 -23.27029 -22.65798 -21.95936 -21.16811 -18.51241 -18.17669 -17.21258 -16.86606 -16.55233 -15.89890 -15.53323 -15.28852 -14.72993 -14.18777 -13.96480 -13.72441 -13.53229 -13.37796 -13.09383 -12.86584 -12.67766 -12.46116 -12.25798 -12.07972 -11.50784 -11.38599 -11.12379 -10.83726 -10.54606 -9.43414 -9.36182 -8.19739 -6.31107 0.80573 1.40651 1.44169 1.52063 1.71192 2.12615 2.41737 3.13313 3.21531 3.89686 4.01379 4.12143 4.16982 4.29349 4.31764 4.40587 4.55758 4.71229 4.77599 4.90837 4.96635 5.01469 5.08778 5.11660 5.24891 5.27686 5.52124 5.63779 5.75173 5.86088 5.98083 6.23649 6.26678 6.48291 6.85979 7.38263 8.92155 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.092142 B = 0.003339 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.805098 B = 8384.844962 C = 8477.641928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.690 5.690 13 C 0.066 3.934 14 C -0.030 4.030 15 C -0.025 4.025 16 C -0.222 4.222 17 C -0.228 4.228 18 C -0.048 4.048 19 O -0.196 6.196 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.010 1.010 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.058 0.942 27 H 0.349 0.651 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -22.298 -1.524 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.058 4.058 12 N -0.322 5.322 13 C -0.063 4.063 14 C -0.067 4.067 15 C -0.076 4.076 16 C -0.241 4.241 17 C -0.247 4.247 18 C -0.115 4.115 19 O -0.093 6.093 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.008 0.992 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.027 -22.086 -0.548 22.456 hybrid contribution -0.496 0.790 -1.048 1.403 sum 3.531 -21.295 -1.596 21.645 Atomic orbital electron populations 1.70096 1.07870 1.27870 1.51713 1.26019 0.95798 1.03496 0.94695 0.85474 0.78249 0.77916 0.79257 1.19015 1.20826 1.19165 1.21695 0.93629 0.92393 1.50559 0.92069 1.18979 0.94473 0.93194 0.94722 1.21381 0.98021 0.92673 1.00981 1.21837 0.94019 0.90264 0.99674 1.60436 1.20015 1.01128 1.50607 1.21880 0.95637 0.88108 1.00659 1.20028 0.96278 0.84857 1.05571 1.22619 1.03818 0.96722 0.84399 1.21941 1.05246 0.96898 1.00007 1.22196 1.06260 1.00868 0.95387 1.24786 1.00617 0.89142 0.96945 1.84028 1.59335 1.30109 1.35829 0.92753 0.99052 0.99175 0.92773 0.92699 0.95695 0.92298 0.83214 0.94771 0.92047 0.89330 0.87061 0.82378 0.81472 0.74906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 11 C 0.07 2.49 5.69 86.30 0.49 2.98 16 12 N -0.69 -19.24 6.50 -513.86 -3.34 -22.58 16 13 C 0.07 1.60 5.67 86.31 0.49 2.09 16 14 C -0.03 -0.59 6.01 29.85 0.18 -0.41 16 15 C -0.03 -0.55 6.57 24.83 0.16 -0.39 16 16 C -0.22 -4.37 10.81 22.19 0.24 -4.13 16 17 C -0.23 -3.92 10.91 22.19 0.24 -3.67 16 18 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 19 O -0.20 -4.47 10.65 -2.51 -0.03 -4.49 16 20 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 23 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.35 8.48 8.73 -89.70 -0.78 7.70 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -67.71 294.37 2.85 -64.86 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.28 Total: 9.94 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 3.62 Total: -36.89 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.06 Total: -80.19 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.03 Total: -4.49 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.71 2.85 -64.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042225238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.307 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds