Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46964 * 299.99589 * 3 2 1 6 6 H 1.48496 * 109.47410 * 59.99709 * 3 2 1 7 7 C 1.37883 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99997 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47094 * 185.15794 * 9 7 2 11 11 C 1.46900 * 111.00362 * 290.91971 * 10 9 7 12 12 C 1.53006 * 117.49577 * 0.40792 * 11 10 9 13 13 C 1.53006 * 117.49350 * 291.78805 * 11 10 9 14 14 C 1.46898 * 110.99707 * 54.87257 * 10 9 7 15 15 H 1.09001 * 109.97455 * 295.34368 * 14 10 9 16 16 C 1.54280 * 109.98611 * 56.61635 * 14 10 9 17 17 C 1.54991 * 103.75175 * 142.51201 * 16 14 10 18 18 C 1.54893 * 102.33297 * 322.91368 * 17 16 14 19 19 C 1.51449 * 109.98467 * 174.07348 * 14 10 9 20 20 O 1.20759 * 126.34305 * 60.95353 * 19 14 10 21 21 H 0.96996 * 119.99406 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46895 * 65.15974 * 9 7 2 23 23 H 1.08996 * 109.47069 * 305.16491 * 9 7 2 24 24 H 1.09001 * 115.55225 * 146.12001 * 11 10 9 25 25 H 1.08994 * 117.50040 * 0.02562 * 12 11 10 26 26 H 1.09000 * 117.49214 * 145.02772 * 12 11 10 27 27 H 1.09003 * 117.49549 * 214.97726 * 13 11 10 28 28 H 1.08993 * 117.50119 * 0.02562 * 13 11 10 29 29 H 1.09002 * 110.56920 * 261.07760 * 16 14 10 30 30 H 1.08995 * 110.57034 * 23.94541 * 16 14 10 31 31 H 1.08997 * 110.83265 * 81.12442 * 17 16 14 32 32 H 1.08994 * 110.82785 * 204.50119 * 17 16 14 33 33 H 1.08993 * 110.43893 * 156.36201 * 18 17 16 34 34 H 1.08999 * 110.43741 * 278.76727 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2006 -3.6130 0.1257 11 6 3.0128 -3.7515 -1.0905 12 6 2.7583 -2.7590 -2.2268 13 6 2.3032 -4.2133 -2.3650 14 6 3.0520 -3.4480 1.3113 15 1 3.6781 -2.5627 1.2000 16 6 2.1767 -3.3192 2.5753 17 6 2.9748 -4.0914 3.6564 18 6 3.5642 -5.2753 2.8501 19 6 3.9195 -4.6750 1.5003 20 8 4.7409 -5.0974 0.7224 21 1 -0.4849 0.8401 -0.0004 22 1 0.6958 -2.5982 -0.9323 23 1 0.5564 -2.5177 0.8404 24 1 4.0381 -4.0874 -0.9354 25 1 1.9885 -2.0031 -2.0718 26 1 3.6163 -2.4418 -2.8195 27 1 2.8619 -4.8527 -3.0485 28 1 1.2338 -4.4139 -2.3011 29 1 2.0633 -2.2725 2.8575 30 1 1.2026 -3.7814 2.4153 31 1 3.7693 -3.4700 4.0694 32 1 2.3133 -4.4474 4.4461 33 1 4.4566 -5.6633 3.3410 34 1 2.8210 -6.0641 2.7338 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050146430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = -6.424973 kcal Electronic energy + Delta-G solvation = -16035.470198 eV Core-core repulsion = 13548.245340 eV Total energy + Delta-G solvation = -2487.224857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71444 -37.44103 -35.65332 -33.10349 -31.82751 -27.60705 -26.99870 -25.27209 -22.85610 -21.40982 -20.21230 -19.60711 -18.40467 -16.56198 -16.20574 -15.72700 -14.98888 -14.62585 -13.95323 -13.74076 -13.27171 -13.07099 -12.42661 -12.26966 -11.85934 -11.50423 -11.33096 -11.16223 -10.91642 -10.76902 -10.67891 -10.46920 -10.11778 -9.96015 -9.93305 -9.42780 -9.29755 -8.77146 -8.48364 -7.15337 -6.08306 -4.15415 2.32334 3.22790 3.32167 3.35720 4.36061 4.50164 4.63269 4.92580 5.03315 5.19665 5.27479 5.34503 5.73890 5.87392 5.88193 5.91213 5.92930 5.98238 6.06983 6.13361 6.31575 6.38520 6.49580 6.72442 6.76894 6.86884 7.20862 7.29884 7.51251 7.83631 7.90035 7.95730 8.21940 8.22502 8.92693 9.49268 10.96331 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.011041 C = 0.008977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.707212 B = 2535.400846 C = 3118.392335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.181 3.819 10 N -0.496 5.496 11 C 0.016 3.984 12 C -0.198 4.198 13 C -0.187 4.187 14 C 0.036 3.964 15 H 0.080 0.920 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.178 4.178 19 C 0.377 3.623 20 O -0.454 6.454 21 H 0.262 0.738 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.113 0.887 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -6.600 4.639 9.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.076 0.924 9 C 0.056 3.944 10 N -0.220 5.220 11 C -0.094 4.094 12 C -0.236 4.236 13 C -0.225 4.225 14 C -0.073 4.073 15 H 0.098 0.902 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.216 4.216 19 C 0.252 3.748 20 O -0.327 6.327 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.131 0.869 25 H 0.150 0.850 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.174 -7.142 4.307 9.326 hybrid contribution 0.826 1.828 -0.176 2.013 sum 5.000 -5.314 4.131 8.385 Atomic orbital electron populations 1.69945 1.05929 1.26752 1.50118 1.24922 0.94709 0.98976 0.95079 0.86641 0.80252 0.84122 0.77681 1.19821 1.20981 1.20995 1.21704 0.93318 0.91606 1.51094 0.92360 1.19955 0.90882 0.85389 0.98189 1.62551 1.15078 1.45136 0.99208 1.22671 0.97082 1.03398 0.86237 1.23705 1.04319 0.93273 1.02325 1.22983 1.00569 0.98445 1.00466 1.22566 0.95377 0.96058 0.93345 0.90223 1.22270 0.98555 1.01432 0.91840 1.22435 0.99789 0.96013 0.97678 1.22843 1.02551 0.99962 0.96231 1.25222 0.78755 0.84563 0.86260 1.90296 1.30240 1.63481 1.48684 0.92836 0.94837 0.94100 0.86929 0.85015 0.90931 0.90268 0.89389 0.90067 0.90136 0.91323 0.90717 0.90004 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.54 -13.78 5.71 -34.44 -0.20 -13.98 16 8 H 0.06 1.53 6.31 -52.49 -0.33 1.20 16 9 C 0.18 4.37 4.24 -4.98 -0.02 4.34 16 10 N -0.50 -10.53 4.72 -220.28 -1.04 -11.57 16 11 C 0.02 0.33 5.37 -67.71 -0.36 -0.04 16 12 C -0.20 -4.14 8.67 -26.72 -0.23 -4.37 16 13 C -0.19 -3.57 10.07 -26.72 -0.27 -3.84 16 14 C 0.04 0.68 2.09 -67.83 -0.14 0.54 16 15 H 0.08 1.68 6.49 -51.93 -0.34 1.34 16 16 C -0.10 -1.70 5.31 -25.01 -0.13 -1.84 16 17 C -0.12 -1.52 6.95 -24.68 -0.17 -1.69 16 18 C -0.18 -2.32 6.72 -26.27 -0.18 -2.50 16 19 C 0.38 6.55 7.16 -28.06 -0.20 6.35 16 20 O -0.45 -8.99 15.69 6.00 0.09 -8.90 16 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 22 H 0.03 0.88 6.35 -51.93 -0.33 0.55 16 23 H 0.04 1.05 6.88 -51.93 -0.36 0.69 16 24 H 0.11 2.40 5.64 -51.93 -0.29 2.10 16 25 H 0.13 3.15 4.89 -51.93 -0.25 2.90 16 26 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.09 1.71 8.01 -51.93 -0.42 1.30 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.38 7.47 -51.93 -0.39 0.99 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 269.65 15.07 4.06 4.06 Total: -1.00 -27.94 269.65 -7.97 -35.91 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.80 Total: 4.23 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.00 Total: -15.37 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.30 Total: -35.64 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.94 -7.97 -35.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.485 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds