Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46964 * 299.99589 * 3 2 1 6 6 H 1.48496 * 109.47410 * 59.99709 * 3 2 1 7 7 C 1.37883 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99997 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47094 * 185.15794 * 9 7 2 11 11 C 1.46900 * 111.00362 * 290.91971 * 10 9 7 12 12 C 1.53006 * 117.49577 * 0.40792 * 11 10 9 13 13 C 1.53006 * 117.49350 * 291.78805 * 11 10 9 14 14 C 1.46898 * 110.99707 * 54.87257 * 10 9 7 15 15 H 1.09001 * 109.97455 * 295.34368 * 14 10 9 16 16 C 1.54280 * 109.98611 * 56.61635 * 14 10 9 17 17 C 1.54991 * 103.75175 * 142.51201 * 16 14 10 18 18 C 1.54893 * 102.33297 * 322.91368 * 17 16 14 19 19 C 1.51449 * 109.98467 * 174.07348 * 14 10 9 20 20 O 1.20759 * 126.34305 * 60.95353 * 19 14 10 21 21 H 0.96996 * 119.99406 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46895 * 65.15974 * 9 7 2 23 23 H 1.08996 * 109.47069 * 305.16491 * 9 7 2 24 24 H 1.09001 * 115.55225 * 146.12001 * 11 10 9 25 25 H 1.08994 * 117.50040 * 0.02562 * 12 11 10 26 26 H 1.09000 * 117.49214 * 145.02772 * 12 11 10 27 27 H 1.09003 * 117.49549 * 214.97726 * 13 11 10 28 28 H 1.08993 * 117.50119 * 0.02562 * 13 11 10 29 29 H 1.09002 * 110.56920 * 261.07760 * 16 14 10 30 30 H 1.08995 * 110.57034 * 23.94541 * 16 14 10 31 31 H 1.08997 * 110.83265 * 81.12442 * 17 16 14 32 32 H 1.08994 * 110.82785 * 204.50119 * 17 16 14 33 33 H 1.08993 * 110.43893 * 156.36201 * 18 17 16 34 34 H 1.08999 * 110.43741 * 278.76727 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2006 -3.6130 0.1257 11 6 3.0128 -3.7515 -1.0905 12 6 2.7583 -2.7590 -2.2268 13 6 2.3032 -4.2133 -2.3650 14 6 3.0520 -3.4480 1.3113 15 1 3.6781 -2.5627 1.2000 16 6 2.1767 -3.3192 2.5753 17 6 2.9748 -4.0914 3.6564 18 6 3.5642 -5.2753 2.8501 19 6 3.9195 -4.6750 1.5003 20 8 4.7409 -5.0974 0.7224 21 1 -0.4849 0.8401 -0.0004 22 1 0.6958 -2.5982 -0.9323 23 1 0.5564 -2.5177 0.8404 24 1 4.0381 -4.0874 -0.9354 25 1 1.9885 -2.0031 -2.0718 26 1 3.6163 -2.4418 -2.8195 27 1 2.8619 -4.8527 -3.0485 28 1 1.2338 -4.4139 -2.3011 29 1 2.0633 -2.2725 2.8575 30 1 1.2026 -3.7814 2.4153 31 1 3.7693 -3.4700 4.0694 32 1 2.3133 -4.4474 4.4461 33 1 4.4566 -5.6633 3.3410 34 1 2.8210 -6.0641 2.7338 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050146430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = -23.637615 kcal Electronic energy + Delta-G solvation = -16036.216594 eV Core-core repulsion = 13548.245340 eV Total energy + Delta-G solvation = -2487.971254 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19089 -39.07428 -37.02370 -35.01125 -33.53598 -29.38861 -28.35012 -26.87905 -24.66195 -23.06488 -21.50455 -21.23321 -19.99190 -18.47671 -17.76845 -17.24562 -16.56738 -16.37997 -15.47871 -15.26219 -14.75614 -14.59818 -14.13834 -13.75466 -13.51295 -13.20933 -12.85023 -12.79104 -12.61815 -12.43847 -12.05664 -11.94769 -11.84540 -11.72316 -11.59391 -11.11175 -11.03741 -10.56403 -10.22098 -8.94086 -8.12618 -6.27141 0.93214 1.34565 1.38594 1.47856 2.38265 2.95897 3.11540 3.23824 3.47866 3.71473 3.98516 4.17375 4.23961 4.26177 4.38130 4.48023 4.57449 4.70987 4.78723 4.84495 4.96285 5.04207 5.17428 5.22127 5.31091 5.35204 5.39982 5.45905 5.56578 5.77393 6.04208 6.23684 6.47330 6.54032 6.87926 7.40278 8.89849 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.011041 C = 0.008977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.707212 B = 2535.400846 C = 3118.392335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.200 3.800 10 N -0.496 5.496 11 C 0.003 3.997 12 C -0.206 4.206 13 C -0.165 4.165 14 C 0.026 3.974 15 H 0.052 0.948 16 C -0.102 4.102 17 C -0.106 4.106 18 C -0.163 4.163 19 C 0.376 3.624 20 O -0.481 6.481 21 H 0.263 0.737 22 H 0.009 0.991 23 H 0.023 0.977 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -7.590 5.737 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.180 4.180 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.219 5.219 11 C -0.107 4.107 12 C -0.244 4.244 13 C -0.202 4.202 14 C -0.083 4.083 15 H 0.070 0.930 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.201 4.201 19 C 0.253 3.747 20 O -0.355 6.355 21 H 0.073 0.927 22 H 0.027 0.973 23 H 0.041 0.959 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.197 -8.137 5.414 11.069 hybrid contribution 0.515 2.120 -0.551 2.250 sum 5.712 -6.016 4.863 9.616 Atomic orbital electron populations 1.70042 1.07183 1.27521 1.51411 1.25591 0.95393 1.01969 0.95037 0.85707 0.78976 0.80518 0.77706 1.19698 1.20887 1.20333 1.21759 0.92781 0.92360 1.50021 0.93277 1.19569 0.91002 0.86049 0.95973 1.62512 1.15592 1.43434 1.00377 1.22773 0.97332 1.04039 0.86524 1.23527 1.04125 0.93589 1.03192 1.23029 1.00513 0.97221 0.99476 1.22779 0.95620 0.96532 0.93406 0.93018 1.22208 0.98478 1.00980 0.92310 1.22434 0.99924 0.95215 0.96822 1.22825 1.04147 1.00155 0.92952 1.25527 0.77533 0.83695 0.87894 1.90283 1.31219 1.63864 1.50169 0.92741 0.97346 0.95885 0.86979 0.88293 0.89451 0.87279 0.89912 0.92063 0.90938 0.90123 0.87646 0.87186 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.57 13.29 21.45 0.28 -52.28 16 2 C 0.02 1.06 5.46 84.66 0.46 1.53 16 3 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.53 -27.91 5.71 25.60 0.15 -27.76 16 8 H 0.05 2.65 6.31 -2.91 -0.02 2.63 16 9 C 0.20 10.00 4.24 85.56 0.36 10.36 16 10 N -0.50 -21.37 4.72 -850.82 -4.02 -25.39 16 11 C 0.00 0.11 5.37 44.92 0.24 0.36 16 12 C -0.21 -8.68 8.67 30.60 0.27 -8.41 16 13 C -0.16 -6.16 10.07 30.60 0.31 -5.85 16 14 C 0.03 0.98 2.09 44.84 0.09 1.08 16 15 H 0.05 2.25 6.49 -2.39 -0.02 2.23 16 16 C -0.10 -3.31 5.31 31.71 0.17 -3.14 16 17 C -0.11 -2.31 6.95 31.92 0.22 -2.08 16 18 C -0.16 -3.67 6.72 30.89 0.21 -3.46 16 19 C 0.38 12.52 7.16 29.74 0.21 12.74 16 20 O -0.48 -18.46 15.69 -1.45 -0.02 -18.48 16 21 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 22 H 0.01 0.47 6.35 -2.38 -0.02 0.45 16 23 H 0.02 1.23 6.88 -2.39 -0.02 1.21 16 24 H 0.11 4.75 5.64 -2.39 -0.01 4.73 16 25 H 0.10 4.89 4.89 -2.39 -0.01 4.88 16 26 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 27 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.08 3.19 8.01 -2.39 -0.02 3.17 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.46 7.47 -2.39 -0.02 2.44 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.20 269.65 2.05 -59.15 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.09 Total: 16.55 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 2.69 Total: -24.65 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.73 Total: -77.67 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.02 Total: -18.48 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.20 2.05 -59.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.511 kcal (2) G-P(sol) polarization free energy of solvation -61.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds