Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99580 * 2 1 4 4 H 1.48508 * 109.47215 * 269.99830 * 3 2 1 5 5 H 1.48501 * 109.47372 * 29.99611 * 3 2 1 6 6 H 1.48503 * 109.47274 * 150.00195 * 3 2 1 7 7 C 1.37875 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99988 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00112 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00096 * 180.02562 * 11 10 9 14 14 H 1.08995 * 110.36400 * 39.48558 * 13 11 10 15 15 C 1.54800 * 110.46004 * 161.92955 * 13 11 10 16 16 C 1.55935 * 104.68575 * 118.76333 * 15 13 11 17 17 H 1.08993 * 116.52718 * 160.45497 * 16 15 13 18 18 C 1.55923 * 104.49650 * 289.78361 * 16 15 13 19 19 C 1.54584 * 104.64638 * 70.27391 * 18 16 15 20 20 C 1.55924 * 104.74259 * 359.94197 * 19 18 16 21 21 H 1.09013 * 115.91404 * 160.09058 * 20 19 18 22 22 C 1.56956 * 100.64559 * 33.83578 * 16 15 13 23 23 H 0.96998 * 120.00533 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47054 * 60.00468 * 9 7 2 25 25 H 1.08996 * 109.47793 * 300.00256 * 9 7 2 26 26 H 0.96997 * 120.00318 * 0.02562 * 10 9 7 27 27 H 1.09001 * 110.33323 * 359.97438 * 15 13 11 28 28 H 1.08995 * 110.43423 * 237.59046 * 15 13 11 29 29 H 1.09007 * 110.40385 * 311.48416 * 18 16 15 30 30 H 1.09001 * 110.40414 * 189.06476 * 18 16 15 31 31 H 1.08998 * 110.39759 * 118.79122 * 19 18 16 32 32 H 1.08998 * 110.40007 * 241.08895 * 19 18 16 33 33 H 1.08997 * 112.02671 * 63.17929 * 22 16 15 34 34 H 1.08999 * 112.02175 * 189.61753 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 7 4.0000 -2.5750 0.0013 11 6 5.3252 -2.8212 0.0016 12 8 6.1132 -1.8993 0.0003 13 6 5.8276 -4.2420 0.0024 14 1 5.2106 -4.8628 -0.6471 15 6 7.3080 -4.2927 -0.4473 16 6 8.0719 -4.8897 0.7740 17 1 9.0547 -5.3156 0.5726 18 6 8.0245 -3.7643 1.8521 19 6 6.5463 -3.7155 2.3016 20 6 5.8370 -4.8144 1.4527 21 1 4.8838 -5.1745 1.8403 22 6 6.9902 -5.8773 1.3380 23 1 -0.4851 0.8400 -0.0004 24 1 3.8753 -0.6794 0.8895 25 1 3.8747 -0.6806 -0.8904 26 1 3.3698 -3.3123 0.0020 27 1 7.6710 -3.2891 -0.6691 28 1 7.4193 -4.9389 -1.3179 29 1 8.3214 -2.8095 1.4181 30 1 8.6694 -4.0170 2.6938 31 1 6.4645 -3.9442 3.3641 32 1 6.1171 -2.7360 2.0904 33 1 6.7481 -6.6676 0.6274 34 1 7.2732 -6.2818 2.3098 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050877936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = -47.734761 kcal Electronic energy + Delta-G solvation = -15619.546174 eV Core-core repulsion = 13130.529989 eV Total energy + Delta-G solvation = -2489.016184 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.69385 -37.84108 -34.25078 -32.35736 -30.60963 -29.47646 -28.03647 -27.33194 -23.09272 -21.55029 -20.30486 -19.89624 -18.54515 -17.08200 -16.32597 -16.04990 -15.45311 -14.96916 -14.26695 -13.89848 -13.36652 -12.61434 -12.55835 -12.42595 -12.01757 -11.81043 -11.41029 -11.22583 -11.08233 -10.97213 -10.87107 -10.74123 -10.66873 -10.26028 -9.96587 -9.84062 -9.48642 -9.04584 -8.77042 -8.10601 -6.21197 -4.23226 3.24645 3.28200 3.33274 3.41820 4.03544 4.33627 4.49283 4.57866 4.67505 5.14050 5.18989 5.30578 5.32590 5.41922 5.51328 5.54439 5.59851 5.71771 5.82030 5.95607 6.10044 6.13335 6.17909 6.28782 6.39175 6.44696 6.57437 6.83571 7.08539 7.27057 7.41741 8.16053 8.55466 8.76510 8.99096 9.39393 10.90839 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051417 B = 0.006649 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.434261 B = 4210.410100 C = 4372.075909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.220 3.780 10 N -0.706 5.706 11 C 0.510 3.490 12 O -0.557 6.557 13 C -0.113 4.113 14 H 0.088 0.912 15 C -0.109 4.109 16 C -0.104 4.104 17 H 0.096 0.904 18 C -0.116 4.116 19 C -0.130 4.130 20 C -0.090 4.090 21 H 0.102 0.898 22 C -0.123 4.123 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.396 0.604 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.199 -11.048 2.235 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.353 5.353 11 C 0.296 3.704 12 O -0.437 6.437 13 C -0.135 4.135 14 H 0.106 0.894 15 C -0.146 4.146 16 C -0.123 4.123 17 H 0.114 0.886 18 C -0.154 4.154 19 C -0.167 4.167 20 C -0.108 4.108 21 H 0.120 0.880 22 C -0.160 4.160 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.229 0.771 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.557 -10.215 2.231 17.120 hybrid contribution -0.176 0.582 -0.042 0.609 sum 13.381 -9.633 2.189 16.633 Atomic orbital electron populations 1.69880 1.06207 1.27404 1.49545 1.24799 0.94783 0.99161 0.93891 0.86820 0.80572 0.83270 0.79039 1.19866 1.20891 1.18540 1.21108 0.88597 0.95198 1.53175 0.90278 1.19468 0.95186 0.78930 0.96628 1.46214 1.05860 1.10857 1.72417 1.20344 0.82928 0.90785 0.76385 1.90608 1.55491 1.46278 1.51322 1.22413 0.98235 0.94417 0.98411 0.89378 1.22612 0.92672 1.02494 0.96853 1.23545 0.97546 0.95537 0.95627 0.88630 1.22562 0.96232 0.98945 0.97637 1.22737 0.95685 0.99637 0.98675 1.23541 0.98311 0.95496 0.93486 0.87961 1.23636 0.95270 0.96588 1.00506 0.92278 0.95852 0.96280 0.77090 0.89518 0.91944 0.91087 0.92603 0.92227 0.90524 0.91326 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.54 -15.04 9.83 -34.44 -0.34 -15.38 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.49 4.50 -5.19 -0.02 5.46 16 10 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 11 C 0.51 9.74 5.45 -10.99 -0.06 9.69 16 12 O -0.56 -12.45 14.47 5.56 0.08 -12.37 16 13 C -0.11 -1.61 3.10 -89.26 -0.28 -1.89 16 14 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.43 5.76 -24.21 -0.14 -1.57 16 16 C -0.10 -1.18 5.19 -85.35 -0.44 -1.62 16 17 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.12 -1.50 6.21 -24.34 -0.15 -1.65 16 19 C -0.13 -1.85 5.89 -24.34 -0.14 -1.99 16 20 C -0.09 -1.13 4.93 -85.18 -0.42 -1.55 16 21 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 22 C -0.12 -1.28 6.43 -22.28 -0.14 -1.42 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.40 7.24 8.32 -40.82 -0.34 6.90 16 27 H 0.09 1.36 6.35 -51.93 -0.33 1.03 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.05 7.84 -51.92 -0.41 0.64 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.36 5.67 -51.93 -0.29 1.07 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 269.18 15.07 4.06 4.06 Total: -1.00 -31.02 269.18 -7.43 -38.46 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.10 Total: 3.46 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.24 Total: -9.82 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.43 Total: -40.77 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.02 -7.43 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050877936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.277 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds