Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99580 * 2 1 4 4 H 1.48508 * 109.47215 * 269.99830 * 3 2 1 5 5 H 1.48501 * 109.47372 * 29.99611 * 3 2 1 6 6 H 1.48503 * 109.47274 * 150.00195 * 3 2 1 7 7 C 1.37875 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99988 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00112 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00096 * 180.02562 * 11 10 9 14 14 H 1.08995 * 110.36400 * 39.48558 * 13 11 10 15 15 C 1.54800 * 110.46004 * 161.92955 * 13 11 10 16 16 C 1.55935 * 104.68575 * 118.76333 * 15 13 11 17 17 H 1.08993 * 116.52718 * 160.45497 * 16 15 13 18 18 C 1.55923 * 104.49650 * 289.78361 * 16 15 13 19 19 C 1.54584 * 104.64638 * 70.27391 * 18 16 15 20 20 C 1.55924 * 104.74259 * 359.94197 * 19 18 16 21 21 H 1.09013 * 115.91404 * 160.09058 * 20 19 18 22 22 C 1.56956 * 100.64559 * 33.83578 * 16 15 13 23 23 H 0.96998 * 120.00533 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47054 * 60.00468 * 9 7 2 25 25 H 1.08996 * 109.47793 * 300.00256 * 9 7 2 26 26 H 0.96997 * 120.00318 * 0.02562 * 10 9 7 27 27 H 1.09001 * 110.33323 * 359.97438 * 15 13 11 28 28 H 1.08995 * 110.43423 * 237.59046 * 15 13 11 29 29 H 1.09007 * 110.40385 * 311.48416 * 18 16 15 30 30 H 1.09001 * 110.40414 * 189.06476 * 18 16 15 31 31 H 1.08998 * 110.39759 * 118.79122 * 19 18 16 32 32 H 1.08998 * 110.40007 * 241.08895 * 19 18 16 33 33 H 1.08997 * 112.02671 * 63.17929 * 22 16 15 34 34 H 1.08999 * 112.02175 * 189.61753 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 7 4.0000 -2.5750 0.0013 11 6 5.3252 -2.8212 0.0016 12 8 6.1132 -1.8993 0.0003 13 6 5.8276 -4.2420 0.0024 14 1 5.2106 -4.8628 -0.6471 15 6 7.3080 -4.2927 -0.4473 16 6 8.0719 -4.8897 0.7740 17 1 9.0547 -5.3156 0.5726 18 6 8.0245 -3.7643 1.8521 19 6 6.5463 -3.7155 2.3016 20 6 5.8370 -4.8144 1.4527 21 1 4.8838 -5.1745 1.8403 22 6 6.9902 -5.8773 1.3380 23 1 -0.4851 0.8400 -0.0004 24 1 3.8753 -0.6794 0.8895 25 1 3.8747 -0.6806 -0.8904 26 1 3.3698 -3.3123 0.0020 27 1 7.6710 -3.2891 -0.6691 28 1 7.4193 -4.9389 -1.3179 29 1 8.3214 -2.8095 1.4181 30 1 8.6694 -4.0170 2.6938 31 1 6.4645 -3.9442 3.3641 32 1 6.1171 -2.7360 2.0904 33 1 6.7481 -6.6676 0.6274 34 1 7.2732 -6.2818 2.3098 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050877936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = -68.607856 kcal Electronic energy + Delta-G solvation = -15620.451299 eV Core-core repulsion = 13130.529989 eV Total energy + Delta-G solvation = -2489.921310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89090 -39.28677 -36.13798 -34.42651 -31.83970 -30.66271 -29.54485 -28.56317 -24.74392 -23.10943 -21.72681 -20.90380 -19.91497 -18.81344 -17.71509 -17.44798 -16.79065 -16.63049 -16.02078 -15.38494 -15.02860 -14.49732 -14.11539 -13.69799 -13.33153 -13.21652 -12.90373 -12.70674 -12.51330 -12.17259 -11.99078 -11.92830 -11.84399 -11.72073 -11.66314 -11.30436 -10.94739 -10.84795 -10.60665 -9.91222 -8.42995 -6.49869 1.28966 1.31178 1.43889 1.75726 2.24861 2.50609 2.92092 3.51219 3.57952 3.62954 4.08062 4.22415 4.34127 4.38212 4.42910 4.49450 4.59283 4.68855 4.78265 4.96607 4.99265 5.05914 5.10669 5.18981 5.22378 5.25483 5.30482 5.34304 5.39259 5.55954 5.57638 6.07262 6.51142 6.86822 7.13530 7.44283 8.71837 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051417 B = 0.006649 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.434261 B = 4210.410100 C = 4372.075909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.708 5.708 11 C 0.508 3.492 12 O -0.593 6.593 13 C -0.110 4.110 14 H 0.113 0.887 15 C -0.111 4.111 16 C -0.095 4.095 17 H 0.123 0.877 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.090 4.090 21 H 0.114 0.886 22 C -0.107 4.107 23 H 0.273 0.727 24 H 0.007 0.993 25 H 0.008 0.992 26 H 0.407 0.593 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.605 -12.920 2.343 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.357 5.357 11 C 0.297 3.703 12 O -0.475 6.475 13 C -0.131 4.131 14 H 0.131 0.869 15 C -0.149 4.149 16 C -0.113 4.113 17 H 0.141 0.859 18 C -0.156 4.156 19 C -0.174 4.174 20 C -0.109 4.109 21 H 0.132 0.868 22 C -0.144 4.144 23 H 0.082 0.918 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.242 0.758 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.964 -12.118 2.338 19.397 hybrid contribution -0.619 1.148 -0.058 1.306 sum 14.345 -10.970 2.280 18.202 Atomic orbital electron populations 1.69974 1.07604 1.28637 1.50649 1.25585 0.95544 1.02587 0.93571 0.85876 0.79146 0.79493 0.79475 1.18927 1.19533 1.18885 1.21296 0.89926 0.94613 1.52642 0.92223 1.19040 0.93382 0.81392 0.95233 1.46102 1.07023 1.09411 1.73184 1.21276 0.81728 0.92818 0.74516 1.90590 1.56196 1.48182 1.52535 1.22523 0.99233 0.90827 1.00498 0.86897 1.22646 0.91893 1.01472 0.98887 1.23620 0.99043 0.94973 0.93680 0.85950 1.22563 0.95575 0.98475 0.98964 1.22751 0.96705 0.97979 0.99950 1.23666 0.99846 0.95799 0.91555 0.86798 1.23598 0.92902 0.95885 1.01983 0.91783 0.97473 0.97417 0.75781 0.92768 0.89421 0.94130 0.90609 0.90970 0.95032 0.89144 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.96 21.45 0.30 -55.84 16 2 C 0.03 1.59 5.47 84.65 0.46 2.05 16 3 Si 0.94 45.05 27.47 68.60 1.88 46.93 16 4 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.76 6.54 99.48 0.65 -12.11 16 7 C -0.55 -30.88 9.83 25.60 0.25 -30.63 16 8 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 9 C 0.23 11.87 4.50 85.63 0.38 12.25 16 10 N -0.71 -29.44 5.55 -466.79 -2.59 -32.03 16 11 C 0.51 19.55 5.45 87.66 0.48 20.02 16 12 O -0.59 -27.38 14.47 -3.04 -0.04 -27.43 16 13 C -0.11 -2.92 3.10 -9.91 -0.03 -2.95 16 14 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.11 -2.70 5.76 32.22 0.19 -2.51 16 16 C -0.10 -1.83 5.19 -7.38 -0.04 -1.87 16 17 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.12 -2.90 6.21 32.15 0.20 -2.70 16 19 C -0.14 -3.76 5.89 32.15 0.19 -3.57 16 20 C -0.09 -2.04 4.93 -7.27 -0.04 -2.08 16 21 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 22 C -0.11 -1.72 6.43 33.48 0.22 -1.51 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 25 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 26 H 0.41 14.88 8.32 -92.71 -0.77 14.11 16 27 H 0.05 1.69 6.35 -2.39 -0.02 1.68 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.23 7.84 -2.38 -0.02 1.21 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.15 5.67 -2.39 -0.01 1.13 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.64 269.18 2.07 -66.56 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.26 Total: 15.31 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 2.26 Total: -13.50 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.29 Total: -87.88 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -68.64 2.07 -66.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050877936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.044 kcal (2) G-P(sol) polarization free energy of solvation -68.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds