Wall clock time and date at job start Mon Mar 30 2020 03:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35050 * 119.15303 * 2 1 4 4 N 1.36265 * 119.41465 * 0.28868 * 3 2 1 5 5 C 1.50535 * 121.17482 * 180.26573 * 3 2 1 6 6 C 1.53130 * 109.46137 * 330.37012 * 5 3 2 7 7 C 1.53202 * 108.84879 * 57.34065 * 6 5 3 8 8 C 1.53003 * 109.53592 * 63.18253 * 7 6 5 9 9 C 1.52997 * 109.53511 * 183.34224 * 7 6 5 10 10 C 1.50702 * 109.47103 * 179.84138 * 9 7 6 11 11 H 1.07999 * 119.99945 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99806 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99926 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47204 * 59.99634 * 14 12 10 16 16 H 1.48505 * 109.47368 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47116 * 300.00225 * 14 12 10 18 18 C 1.39916 * 119.13220 * 180.12288 * 2 1 3 19 19 O 1.21531 * 119.76820 * 0.05562 * 18 2 1 20 20 H 1.09000 * 109.46952 * 64.81853 * 1 2 3 21 21 H 1.08999 * 109.47035 * 184.81690 * 1 2 3 22 22 H 1.08996 * 109.47291 * 304.81346 * 1 2 3 23 23 H 0.96998 * 120.00350 * 174.10307 * 4 3 2 24 24 H 0.97002 * 119.99695 * 354.10359 * 4 3 2 25 25 H 1.08997 * 109.47698 * 210.37564 * 5 3 2 26 26 H 1.09001 * 109.47296 * 90.36620 * 5 3 2 27 27 H 1.08996 * 109.57557 * 297.53061 * 6 5 3 28 28 H 1.09002 * 109.57294 * 177.14785 * 6 5 3 29 29 H 1.09005 * 109.46799 * 180.15847 * 8 7 6 30 30 H 1.08999 * 109.46955 * 300.15678 * 8 7 6 31 31 H 1.09003 * 109.47102 * 60.15909 * 8 7 6 32 32 H 1.09003 * 109.47319 * 299.83780 * 9 7 6 33 33 H 1.08996 * 109.47223 * 59.83905 * 9 7 6 34 34 H 0.97003 * 120.00154 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1649 1.1794 0.0000 4 7 1.4543 2.3421 0.0060 5 6 3.6693 1.2325 -0.0060 6 6 4.2264 -0.0053 0.7028 7 6 3.6947 -1.2589 0.0007 8 6 4.2087 -1.2953 -1.4400 9 6 4.1744 -2.5055 0.7468 10 6 3.6474 -3.7375 0.0573 11 1 3.0315 -3.6410 -0.8247 12 6 3.9515 -4.9879 0.5523 13 7 4.7019 -5.1054 1.6260 14 14 3.2977 -6.5150 -0.3019 15 1 3.7962 -6.5517 -1.7003 16 1 3.7644 -7.7250 0.4214 17 1 1.8130 -6.4823 -0.3066 18 6 2.1882 -1.2222 -0.0026 19 8 1.5604 -2.2628 -0.0059 20 1 -0.3633 0.4373 -0.9300 21 1 -0.3633 -1.0240 0.0863 22 1 -0.3634 0.5867 0.8437 23 1 1.9147 3.1915 0.0923 24 1 0.4880 2.3203 -0.0761 25 1 4.0034 2.1302 0.5143 26 1 4.0281 1.2542 -1.0350 27 1 3.9044 -0.0057 1.7441 28 1 5.3153 0.0058 0.6552 29 1 3.8275 -2.1861 -1.9393 30 1 3.8663 -0.4068 -1.9704 31 1 5.2985 -1.3190 -1.4364 32 1 5.2641 -2.5296 0.7510 33 1 3.8077 -2.4784 1.7728 34 1 4.9155 -5.9851 1.9745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075580945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:55 Heat of formation + Delta-G solvation = -37.882755 kcal Electronic energy + Delta-G solvation = -15971.693548 eV Core-core repulsion = 13483.104579 eV Total energy + Delta-G solvation = -2488.588969 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.97012 -36.87234 -35.21977 -32.52610 -31.13461 -30.12716 -26.71853 -25.95704 -25.19688 -22.41236 -21.48680 -19.42408 -17.44392 -16.61688 -16.14865 -15.31004 -14.65875 -14.13456 -14.03744 -13.56739 -13.46773 -12.92693 -12.27378 -12.08577 -12.04283 -11.70306 -11.43853 -11.26600 -10.93836 -10.87388 -10.71347 -10.64646 -10.38509 -10.17084 -10.03847 -9.16704 -8.81276 -8.17847 -7.86442 -7.34369 -5.72987 -3.66450 1.86989 3.52346 3.54896 3.62070 3.85751 4.00146 4.71455 4.81481 5.18935 5.26208 5.37102 5.64244 5.73358 5.84580 5.89959 5.99056 6.01351 6.15114 6.19504 6.31894 6.43057 6.56635 6.61660 6.74432 6.98761 7.13119 7.28402 7.49519 7.65451 7.80345 7.89088 8.27969 8.69143 9.00571 9.35672 9.92198 11.39840 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040168 B = 0.008805 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.896535 B = 3179.192659 C = 3544.269256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.340 4.340 3 C 0.233 3.767 4 N -0.851 5.851 5 C -0.097 4.097 6 C -0.102 4.102 7 C -0.103 4.103 8 C -0.120 4.120 9 C 0.042 3.958 10 C -0.477 4.477 11 H 0.065 0.935 12 C 0.047 3.953 13 N -0.910 5.910 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.278 1.278 18 C 0.407 3.593 19 O -0.448 6.448 20 H 0.044 0.956 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.394 0.606 24 H 0.400 0.600 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 16.951 -3.660 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.351 4.351 3 C 0.122 3.878 4 N -0.388 5.388 5 C -0.134 4.134 6 C -0.140 4.140 7 C -0.104 4.104 8 C -0.177 4.177 9 C 0.006 3.994 10 C -0.515 4.515 11 H 0.083 0.917 12 C -0.151 4.151 13 N -0.552 5.552 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.204 1.204 18 C 0.286 3.714 19 O -0.323 6.323 20 H 0.062 0.938 21 H 0.091 0.909 22 H 0.063 0.937 23 H 0.222 0.778 24 H 0.230 0.770 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.343 16.225 -3.556 16.943 hybrid contribution -0.556 -0.396 -0.308 0.749 sum -3.900 15.828 -3.863 16.753 Atomic orbital electron populations 1.20268 0.92118 1.03187 0.98978 1.20048 0.96543 0.93817 1.24726 1.20006 0.92904 0.86306 0.88623 1.42182 1.10197 1.06318 1.80063 1.20870 0.89487 1.00209 1.02862 1.21677 1.00612 0.92342 0.99351 1.21194 0.94504 0.97339 0.97341 1.21635 1.00606 1.00823 0.94662 1.19056 0.96083 0.89495 0.94814 1.21239 1.28598 0.90049 1.11652 0.91702 1.24953 0.95822 0.98920 0.95385 1.69961 1.39047 1.23069 1.23091 0.86708 0.79528 0.82669 0.79373 1.20637 1.21776 1.20368 1.19971 0.90679 0.87647 0.73143 1.90589 1.69544 1.35609 1.36537 0.93756 0.90863 0.93731 0.77797 0.76995 0.90846 0.89025 0.91613 0.90770 0.91330 0.94689 0.92615 0.96205 0.96743 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 8.63 36.01 0.31 -1.07 16 2 C -0.34 -5.91 5.76 -105.13 -0.61 -6.52 16 3 C 0.23 3.08 6.70 -81.84 -0.55 2.53 16 4 N -0.85 -7.67 8.82 33.61 0.30 -7.38 16 5 C -0.10 -1.17 5.61 -27.90 -0.16 -1.32 16 6 C -0.10 -1.63 4.79 -26.56 -0.13 -1.76 16 7 C -0.10 -2.15 0.54 -155.56 -0.08 -2.23 16 8 C -0.12 -2.28 7.93 37.16 0.29 -1.98 16 9 C 0.04 1.13 3.97 -27.88 -0.11 1.02 16 10 C -0.48 -14.20 6.77 -34.44 -0.23 -14.44 16 11 H 0.06 1.96 5.50 -52.49 -0.29 1.67 16 12 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 13 N -0.91 -28.80 13.29 55.43 0.74 -28.06 16 14 Si 0.89 23.65 29.54 -169.99 -5.02 18.63 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 17 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 18 C 0.41 8.94 5.68 -33.68 -0.19 8.75 16 19 O -0.45 -11.90 13.28 5.34 0.07 -11.83 16 20 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 21 H 0.07 1.34 7.01 -51.93 -0.36 0.97 16 22 H 0.04 0.59 7.82 -51.93 -0.41 0.19 16 23 H 0.39 2.40 8.83 -40.82 -0.36 2.04 16 24 H 0.40 3.29 7.08 -40.82 -0.29 3.00 16 25 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.09 1.03 6.59 -51.93 -0.34 0.69 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 30 H 0.03 0.55 6.52 -51.93 -0.34 0.21 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -35.44 269.26 -6.23 -41.67 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.82 Total: -1.43 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.55 Total: -15.67 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 1.03 Total: -35.44 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.02 Total: 18.63 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.44 -6.23 -41.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.783 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds