Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35050 * 119.15303 * 2 1 4 4 N 1.36265 * 119.41465 * 0.28868 * 3 2 1 5 5 C 1.50535 * 121.17482 * 180.26573 * 3 2 1 6 6 C 1.53130 * 109.46137 * 330.37012 * 5 3 2 7 7 C 1.53202 * 108.84879 * 57.34065 * 6 5 3 8 8 C 1.53003 * 109.53592 * 63.18253 * 7 6 5 9 9 C 1.52997 * 109.53511 * 183.34224 * 7 6 5 10 10 C 1.50702 * 109.47103 * 179.84138 * 9 7 6 11 11 H 1.07999 * 119.99945 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99806 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99926 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47204 * 59.99634 * 14 12 10 16 16 H 1.48505 * 109.47368 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47116 * 300.00225 * 14 12 10 18 18 C 1.39916 * 119.13220 * 180.12288 * 2 1 3 19 19 O 1.21531 * 119.76820 * 0.05562 * 18 2 1 20 20 H 1.09000 * 109.46952 * 64.81853 * 1 2 3 21 21 H 1.08999 * 109.47035 * 184.81690 * 1 2 3 22 22 H 1.08996 * 109.47291 * 304.81346 * 1 2 3 23 23 H 0.96998 * 120.00350 * 174.10307 * 4 3 2 24 24 H 0.97002 * 119.99695 * 354.10359 * 4 3 2 25 25 H 1.08997 * 109.47698 * 210.37564 * 5 3 2 26 26 H 1.09001 * 109.47296 * 90.36620 * 5 3 2 27 27 H 1.08996 * 109.57557 * 297.53061 * 6 5 3 28 28 H 1.09002 * 109.57294 * 177.14785 * 6 5 3 29 29 H 1.09005 * 109.46799 * 180.15847 * 8 7 6 30 30 H 1.08999 * 109.46955 * 300.15678 * 8 7 6 31 31 H 1.09003 * 109.47102 * 60.15909 * 8 7 6 32 32 H 1.09003 * 109.47319 * 299.83780 * 9 7 6 33 33 H 1.08996 * 109.47223 * 59.83905 * 9 7 6 34 34 H 0.97003 * 120.00154 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1649 1.1794 0.0000 4 7 1.4543 2.3421 0.0060 5 6 3.6693 1.2325 -0.0060 6 6 4.2264 -0.0053 0.7028 7 6 3.6947 -1.2589 0.0007 8 6 4.2087 -1.2953 -1.4400 9 6 4.1744 -2.5055 0.7468 10 6 3.6474 -3.7375 0.0573 11 1 3.0315 -3.6410 -0.8247 12 6 3.9515 -4.9879 0.5523 13 7 4.7019 -5.1054 1.6260 14 14 3.2977 -6.5150 -0.3019 15 1 3.7962 -6.5517 -1.7003 16 1 3.7644 -7.7250 0.4214 17 1 1.8130 -6.4823 -0.3066 18 6 2.1882 -1.2222 -0.0026 19 8 1.5604 -2.2628 -0.0059 20 1 -0.3633 0.4373 -0.9300 21 1 -0.3633 -1.0240 0.0863 22 1 -0.3634 0.5867 0.8437 23 1 1.9147 3.1915 0.0923 24 1 0.4880 2.3203 -0.0761 25 1 4.0034 2.1302 0.5143 26 1 4.0281 1.2542 -1.0350 27 1 3.9044 -0.0057 1.7441 28 1 5.3153 0.0058 0.6552 29 1 3.8275 -2.1861 -1.9393 30 1 3.8663 -0.4068 -1.9704 31 1 5.2985 -1.3190 -1.4364 32 1 5.2641 -2.5296 0.7510 33 1 3.8077 -2.4784 1.7728 34 1 4.9155 -5.9851 1.9745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = -63.896365 kcal Electronic energy + Delta-G solvation = -15972.821583 eV Core-core repulsion = 13483.104579 eV Total energy + Delta-G solvation = -2489.717004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.39762 -38.21973 -36.78569 -34.62582 -32.39206 -31.62723 -28.65127 -27.22542 -26.78616 -24.35347 -22.76251 -20.95216 -18.69632 -18.31680 -17.67554 -16.78092 -16.55775 -15.68134 -15.41700 -15.06543 -14.99232 -14.52237 -13.93408 -13.60136 -13.39361 -13.23817 -13.09109 -12.77499 -12.71820 -12.64606 -12.43860 -12.23239 -12.04574 -11.97837 -11.50967 -11.08748 -10.78667 -10.49152 -9.63028 -8.49267 -8.08432 -6.07111 0.60220 1.33570 1.39339 1.46994 2.46853 2.53522 2.92610 3.24671 3.72002 3.84046 4.06429 4.17722 4.49163 4.52480 4.64959 4.71784 4.85649 4.89422 4.96357 5.04013 5.09550 5.18484 5.24523 5.37172 5.48887 5.53132 5.58398 5.73748 5.87244 6.01620 6.41999 6.46025 6.89871 7.00666 7.46703 7.56345 9.04465 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040168 B = 0.008805 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.896535 B = 3179.192659 C = 3544.269256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.405 4.405 3 C 0.288 3.712 4 N -0.817 5.817 5 C -0.094 4.094 6 C -0.098 4.098 7 C -0.109 4.109 8 C -0.113 4.113 9 C 0.049 3.951 10 C -0.481 4.481 11 H 0.054 0.946 12 C -0.013 4.013 13 N -0.944 5.944 14 Si 0.949 3.051 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.286 1.286 18 C 0.398 3.602 19 O -0.528 6.528 20 H 0.064 0.936 21 H 0.030 0.970 22 H 0.063 0.937 23 H 0.418 0.582 24 H 0.410 0.590 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.004 0.996 33 H -0.027 1.027 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 20.787 -4.818 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.416 4.416 3 C 0.170 3.830 4 N -0.351 5.351 5 C -0.131 4.131 6 C -0.136 4.136 7 C -0.110 4.110 8 C -0.170 4.170 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.072 0.928 12 C -0.208 4.208 13 N -0.588 5.588 14 Si 0.776 3.224 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.212 1.212 18 C 0.283 3.717 19 O -0.410 6.410 20 H 0.083 0.917 21 H 0.049 0.951 22 H 0.082 0.918 23 H 0.250 0.750 24 H 0.241 0.759 25 H 0.142 0.858 26 H 0.134 0.866 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.022 0.978 33 H -0.009 1.009 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.032 20.156 -4.726 20.923 hybrid contribution -0.632 -1.348 0.081 1.491 sum -3.663 18.808 -4.645 19.717 Atomic orbital electron populations 1.20163 0.91507 1.01119 1.00811 1.19714 0.97217 0.93354 1.31308 1.20070 0.93773 0.86082 0.83116 1.42261 1.10992 1.06053 1.75821 1.20997 0.87925 0.99795 1.04375 1.21596 1.01613 0.91779 0.98569 1.21172 0.94799 0.96841 0.98178 1.21563 1.01095 1.00989 0.93374 1.18889 0.94654 0.92114 0.93169 1.21549 1.27516 0.91577 1.11275 0.92790 1.25804 0.96443 1.02207 0.96333 1.70078 1.40474 1.23738 1.24476 0.85735 0.78213 0.79286 0.79181 1.18951 1.20507 1.21209 1.20499 0.90999 0.88653 0.71536 1.90547 1.70584 1.38148 1.41676 0.91739 0.95096 0.91781 0.75023 0.75890 0.85771 0.86572 0.92857 0.89196 0.95054 0.90609 0.91512 0.97770 1.00854 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.42 8.63 71.24 0.61 -1.80 16 2 C -0.40 -13.58 5.76 -20.19 -0.12 -13.70 16 3 C 0.29 6.26 6.70 41.08 0.28 6.53 16 4 N -0.82 -9.54 8.82 -47.57 -0.42 -9.96 16 5 C -0.09 -1.71 5.61 29.84 0.17 -1.55 16 6 C -0.10 -2.91 4.79 30.71 0.15 -2.76 16 7 C -0.11 -4.61 0.54 -52.86 -0.03 -4.64 16 8 C -0.11 -4.22 7.93 71.98 0.57 -3.65 16 9 C 0.05 2.75 3.97 29.85 0.12 2.87 16 10 C -0.48 -30.27 6.77 25.60 0.17 -30.10 16 11 H 0.05 3.47 5.50 -2.91 -0.02 3.46 16 12 C -0.01 -0.85 5.46 84.65 0.46 -0.39 16 13 N -0.94 -62.31 13.29 21.45 0.28 -62.03 16 14 Si 0.95 50.52 29.54 68.60 2.03 52.55 16 15 H -0.26 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 17 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 18 C 0.40 18.10 5.68 26.09 0.15 18.25 16 19 O -0.53 -30.26 13.28 -3.81 -0.05 -30.31 16 20 H 0.06 1.60 8.05 -2.39 -0.02 1.58 16 21 H 0.03 1.18 7.01 -2.39 -0.02 1.17 16 22 H 0.06 1.59 7.82 -2.39 -0.02 1.57 16 23 H 0.42 1.84 8.83 -92.71 -0.82 1.03 16 24 H 0.41 4.35 7.08 -92.71 -0.66 3.69 16 25 H 0.12 1.22 8.13 -2.39 -0.02 1.20 16 26 H 0.12 1.77 6.59 -2.39 -0.02 1.76 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.03 1.37 6.62 -2.38 -0.02 1.36 16 30 H 0.08 2.16 6.52 -2.39 -0.02 2.15 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 33 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 34 H 0.26 16.05 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -86.49 269.26 4.01 -82.48 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -0.36 Total: -1.80 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 2.53 Total: -30.94 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -0.13 Total: -71.98 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.03 Total: 52.55 kcal Total: -86.49 4.01 -82.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.581 kcal (2) G-P(sol) polarization free energy of solvation -86.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds