Wall clock time and date at job start Mon Mar 30 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35051 * 119.15326 * 2 1 4 4 N 1.36258 * 119.41540 * 359.71090 * 3 2 1 5 5 C 1.50539 * 121.17459 * 179.73510 * 3 2 1 6 6 C 1.53116 * 109.45625 * 29.67237 * 5 3 2 7 7 C 1.53193 * 108.85954 * 302.65366 * 6 5 3 8 8 C 1.53001 * 109.60475 * 296.84418 * 7 6 5 9 9 C 1.52996 * 109.53544 * 176.64504 * 7 6 5 10 10 C 1.50702 * 109.47159 * 180.39545 * 9 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.39829 * 119.15547 * 180.02562 * 2 1 3 19 19 O 1.21530 * 119.70278 * 359.93032 * 18 2 1 20 20 H 1.09004 * 109.47189 * 269.97915 * 1 2 3 21 21 H 1.09006 * 109.47717 * 29.97672 * 1 2 3 22 22 H 1.09004 * 109.47515 * 149.97923 * 1 2 3 23 23 H 0.97005 * 119.99941 * 359.97438 * 4 3 2 24 24 H 0.96995 * 120.00305 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.47346 * 149.64403 * 5 3 2 26 26 H 1.09003 * 109.47306 * 269.65184 * 5 3 2 27 27 H 1.08997 * 109.57909 * 182.83729 * 6 5 3 28 28 H 1.09003 * 109.56044 * 62.46044 * 6 5 3 29 29 H 1.09000 * 109.46874 * 299.80671 * 8 7 6 30 30 H 1.09004 * 109.46976 * 59.80441 * 8 7 6 31 31 H 1.08995 * 109.47218 * 179.79633 * 8 7 6 32 32 H 1.09004 * 109.47066 * 60.39748 * 9 7 6 33 33 H 1.08994 * 109.47405 * 300.39578 * 9 7 6 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1648 1.1794 0.0000 4 7 1.4543 2.3421 -0.0060 5 6 3.6693 1.2325 0.0060 6 6 4.2261 -0.0047 -0.7037 7 6 3.6946 -1.2589 -0.0026 8 6 4.2075 -1.2977 1.4383 9 6 4.1741 -2.5048 -0.7501 10 6 3.6425 -3.7373 -0.0649 11 1 3.0241 -3.6415 0.8154 12 6 3.9404 -4.9870 -0.5655 13 7 4.6930 -5.1036 -1.6376 14 14 3.2751 -6.5144 0.2794 15 1 1.7906 -6.4728 0.2801 16 1 3.7365 -7.7235 -0.4489 17 1 3.7697 -6.5612 1.6788 18 6 2.1882 -1.2211 -0.0005 19 8 1.5597 -2.2613 0.0003 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3635 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 0.4846 2.3178 -0.0106 24 1 1.9181 3.1939 -0.0064 25 1 4.0032 2.1304 -0.5141 26 1 4.0281 1.2539 1.0350 27 1 5.3150 0.0063 -0.6565 28 1 3.9038 -0.0041 -1.7450 29 1 5.2972 -1.3221 1.4356 30 1 3.8653 -0.4097 1.9699 31 1 3.8252 -2.1888 1.9361 32 1 5.2638 -2.5310 -0.7510 33 1 3.8105 -2.4747 -1.7771 34 1 4.9029 -5.9828 -1.9896 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075580946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:57 Heat of formation + Delta-G solvation = -35.021505 kcal Electronic energy + Delta-G solvation = -15973.466664 eV Core-core repulsion = 13485.001768 eV Total energy + Delta-G solvation = -2488.464896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97826 -36.88753 -35.22236 -32.52770 -31.12437 -30.14408 -26.71772 -25.98336 -25.18782 -22.40694 -21.49531 -19.41910 -17.49200 -16.62988 -16.13078 -15.34850 -14.63167 -14.13956 -14.04924 -13.54452 -13.46198 -12.87127 -12.27150 -12.07754 -12.04677 -11.72147 -11.45956 -11.25323 -11.00691 -10.86655 -10.71014 -10.62794 -10.39001 -10.17097 -10.03925 -9.16603 -8.81099 -8.17461 -7.85510 -7.33352 -5.72852 -3.66186 1.87287 3.52517 3.55041 3.62291 3.84479 4.01322 4.71609 4.81124 5.17896 5.24917 5.37079 5.64191 5.72447 5.78957 5.88875 5.98078 6.07873 6.14323 6.18591 6.31893 6.42179 6.56655 6.62074 6.71940 6.98932 7.13372 7.28809 7.48858 7.65456 7.80477 7.89209 8.28217 8.69395 9.01249 9.35977 9.92411 11.39996 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040118 B = 0.008816 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.781903 B = 3175.348518 C = 3541.820701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.342 4.342 3 C 0.234 3.766 4 N -0.853 5.853 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.103 4.103 8 C -0.120 4.120 9 C 0.042 3.958 10 C -0.477 4.477 11 H 0.065 0.935 12 C 0.047 3.953 13 N -0.910 5.910 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.280 1.280 18 C 0.406 3.594 19 O -0.448 6.448 20 H 0.048 0.952 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.400 0.600 24 H 0.394 0.606 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 16.974 3.672 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.353 4.353 3 C 0.123 3.877 4 N -0.390 5.390 5 C -0.134 4.134 6 C -0.140 4.140 7 C -0.104 4.104 8 C -0.177 4.177 9 C 0.006 3.994 10 C -0.515 4.515 11 H 0.083 0.917 12 C -0.151 4.151 13 N -0.552 5.552 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.206 1.206 18 C 0.285 3.715 19 O -0.323 6.323 20 H 0.067 0.933 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.231 0.769 24 H 0.222 0.778 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.341 16.250 3.564 16.969 hybrid contribution -0.567 -0.401 0.287 0.752 sum -3.908 15.849 3.851 16.772 Atomic orbital electron populations 1.20221 0.92107 1.01098 1.00476 1.20030 0.96504 0.93842 1.24878 1.19999 0.92920 0.86346 0.88480 1.42284 1.09800 1.06096 1.80811 1.20866 0.89435 1.00245 1.02873 1.21675 1.00620 0.92337 0.99340 1.21193 0.94534 0.97315 0.97343 1.21630 1.00601 1.00831 0.94649 1.19056 0.96084 0.89511 0.94796 1.21248 1.28497 0.90059 1.11726 0.91689 1.24955 0.95836 0.98926 0.95373 1.69964 1.39038 1.23099 1.23074 0.86706 0.79576 0.82659 0.79322 1.20371 1.21784 1.20638 1.19946 0.90672 0.87617 0.73259 1.90595 1.69567 1.35692 1.36445 0.93282 0.94069 0.91440 0.76860 0.77839 0.90803 0.89034 0.90768 0.91621 0.92624 0.94685 0.91333 0.96213 0.96748 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 9.20 36.00 0.33 -0.94 16 2 C -0.34 -5.93 5.76 -105.16 -0.61 -6.54 16 3 C 0.23 3.09 6.70 -81.84 -0.55 2.55 16 4 N -0.85 -7.69 8.80 33.61 0.30 -7.40 16 5 C -0.10 -1.16 5.61 -27.90 -0.16 -1.32 16 6 C -0.10 -1.63 4.79 -26.57 -0.13 -1.76 16 7 C -0.10 -2.15 0.54 -155.56 -0.08 -2.23 16 8 C -0.12 -2.28 7.94 37.16 0.29 -1.98 16 9 C 0.04 1.13 3.97 -27.88 -0.11 1.02 16 10 C -0.48 -14.21 6.77 -34.44 -0.23 -14.44 16 11 H 0.07 1.96 5.50 -52.49 -0.29 1.67 16 12 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 13 N -0.91 -28.81 13.29 55.43 0.74 -28.08 16 14 Si 0.89 23.68 29.54 -169.99 -5.02 18.66 16 15 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 16 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 17 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 18 C 0.41 8.94 5.67 -33.72 -0.19 8.75 16 19 O -0.45 -11.93 13.51 5.34 0.07 -11.86 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.04 0.50 6.32 -51.93 -0.33 0.17 16 22 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 23 H 0.40 3.30 6.45 -40.82 -0.26 3.04 16 24 H 0.39 2.40 8.83 -40.82 -0.36 2.04 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.03 6.60 -51.93 -0.34 0.68 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.55 6.53 -51.93 -0.34 0.21 16 31 H 0.07 1.48 6.63 -51.93 -0.34 1.13 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 268.52 15.07 4.05 4.05 Total: -1.00 -35.51 268.52 -6.15 -41.66 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.75 Total: -1.47 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.53 Total: -15.56 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 1.03 Total: -35.47 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -35.51 -6.15 -41.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.634 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds