Wall clock time and date at job start Mon Mar 30 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35051 * 119.15326 * 2 1 4 4 N 1.36258 * 119.41540 * 359.71090 * 3 2 1 5 5 C 1.50539 * 121.17459 * 179.73510 * 3 2 1 6 6 C 1.53116 * 109.45625 * 29.67237 * 5 3 2 7 7 C 1.53193 * 108.85954 * 302.65366 * 6 5 3 8 8 C 1.53001 * 109.60475 * 296.84418 * 7 6 5 9 9 C 1.52996 * 109.53544 * 176.64504 * 7 6 5 10 10 C 1.50702 * 109.47159 * 180.39545 * 9 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.39829 * 119.15547 * 180.02562 * 2 1 3 19 19 O 1.21530 * 119.70278 * 359.93032 * 18 2 1 20 20 H 1.09004 * 109.47189 * 269.97915 * 1 2 3 21 21 H 1.09006 * 109.47717 * 29.97672 * 1 2 3 22 22 H 1.09004 * 109.47515 * 149.97923 * 1 2 3 23 23 H 0.97005 * 119.99941 * 359.97438 * 4 3 2 24 24 H 0.96995 * 120.00305 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.47346 * 149.64403 * 5 3 2 26 26 H 1.09003 * 109.47306 * 269.65184 * 5 3 2 27 27 H 1.08997 * 109.57909 * 182.83729 * 6 5 3 28 28 H 1.09003 * 109.56044 * 62.46044 * 6 5 3 29 29 H 1.09000 * 109.46874 * 299.80671 * 8 7 6 30 30 H 1.09004 * 109.46976 * 59.80441 * 8 7 6 31 31 H 1.08995 * 109.47218 * 179.79633 * 8 7 6 32 32 H 1.09004 * 109.47066 * 60.39748 * 9 7 6 33 33 H 1.08994 * 109.47405 * 300.39578 * 9 7 6 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1648 1.1794 0.0000 4 7 1.4543 2.3421 -0.0060 5 6 3.6693 1.2325 0.0060 6 6 4.2261 -0.0047 -0.7037 7 6 3.6946 -1.2589 -0.0026 8 6 4.2075 -1.2977 1.4383 9 6 4.1741 -2.5048 -0.7501 10 6 3.6425 -3.7373 -0.0649 11 1 3.0241 -3.6415 0.8154 12 6 3.9404 -4.9870 -0.5655 13 7 4.6930 -5.1036 -1.6376 14 14 3.2751 -6.5144 0.2794 15 1 1.7906 -6.4728 0.2801 16 1 3.7365 -7.7235 -0.4489 17 1 3.7697 -6.5612 1.6788 18 6 2.1882 -1.2211 -0.0005 19 8 1.5597 -2.2613 0.0003 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3635 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 0.4846 2.3178 -0.0106 24 1 1.9181 3.1939 -0.0064 25 1 4.0032 2.1304 -0.5141 26 1 4.0281 1.2539 1.0350 27 1 5.3150 0.0063 -0.6565 28 1 3.9038 -0.0041 -1.7450 29 1 5.2972 -1.3221 1.4356 30 1 3.8653 -0.4097 1.9699 31 1 3.8252 -2.1888 1.9361 32 1 5.2638 -2.5310 -0.7510 33 1 3.8105 -2.4747 -1.7771 34 1 4.9029 -5.9828 -1.9896 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:57 Heat of formation + Delta-G solvation = -61.119784 kcal Electronic energy + Delta-G solvation = -15974.598370 eV Core-core repulsion = 13485.001768 eV Total energy + Delta-G solvation = -2489.596602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40588 -38.24058 -36.79078 -34.63101 -32.38563 -31.64845 -28.65191 -27.25579 -26.77829 -24.35194 -22.77452 -20.94982 -18.72678 -18.32407 -17.70323 -16.78661 -16.55442 -15.64444 -15.50020 -15.06823 -14.97773 -14.49339 -13.89193 -13.61140 -13.39096 -13.25132 -13.08699 -12.76557 -12.74093 -12.64181 -12.45668 -12.25992 -12.05407 -11.95709 -11.53620 -11.08754 -10.78647 -10.49117 -9.62239 -8.49412 -8.08473 -6.07001 0.60025 1.33483 1.39304 1.46956 2.46897 2.53727 2.90960 3.24649 3.70992 3.83906 4.05711 4.17873 4.48280 4.51795 4.63161 4.70276 4.82647 4.89202 4.96771 5.03439 5.09054 5.18568 5.23315 5.37112 5.49098 5.52765 5.57962 5.73736 5.87003 6.01938 6.41715 6.45358 6.89102 7.00740 7.46875 7.56455 9.04441 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040118 B = 0.008816 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.781903 B = 3175.348518 C = 3541.820701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.406 4.406 3 C 0.289 3.711 4 N -0.817 5.817 5 C -0.094 4.094 6 C -0.097 4.097 7 C -0.109 4.109 8 C -0.113 4.113 9 C 0.049 3.951 10 C -0.481 4.481 11 H 0.054 0.946 12 C -0.013 4.013 13 N -0.944 5.944 14 Si 0.949 3.051 15 H -0.286 1.286 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.397 3.603 19 O -0.528 6.528 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.026 0.974 23 H 0.409 0.591 24 H 0.418 0.582 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.004 0.996 33 H -0.027 1.027 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 20.851 4.824 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.418 4.418 3 C 0.171 3.829 4 N -0.353 5.353 5 C -0.131 4.131 6 C -0.136 4.136 7 C -0.110 4.110 8 C -0.170 4.170 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.072 0.928 12 C -0.208 4.208 13 N -0.588 5.588 14 Si 0.776 3.224 15 H -0.212 1.212 16 H -0.205 1.205 17 H -0.189 1.189 18 C 0.283 3.717 19 O -0.410 6.410 20 H 0.068 0.932 21 H 0.095 0.905 22 H 0.045 0.955 23 H 0.242 0.758 24 H 0.250 0.750 25 H 0.143 0.857 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.022 0.978 33 H -0.009 1.009 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.997 20.224 4.730 20.985 hybrid contribution -0.649 -1.360 -0.101 1.510 sum -3.646 18.864 4.629 19.763 Atomic orbital electron populations 1.20121 0.91531 1.00857 1.00503 1.19685 0.97163 0.93401 1.31503 1.20076 0.93815 0.86111 0.82861 1.42358 1.10606 1.05874 1.76478 1.20997 0.87838 0.99832 1.04421 1.21594 1.01638 0.91761 0.98558 1.21171 0.94806 0.96835 0.98184 1.21558 1.01100 1.00996 0.93354 1.18890 0.94665 0.92120 0.93154 1.21558 1.27418 0.91589 1.11343 0.92791 1.25806 0.96475 1.02212 0.96303 1.70080 1.40466 1.23770 1.24449 0.85734 0.78225 0.79287 0.79167 1.21229 1.20503 1.18946 1.20482 0.91010 0.88620 0.71627 1.90551 1.70616 1.38241 1.41625 0.93198 0.90468 0.95472 0.75799 0.75013 0.85709 0.86532 0.89167 0.92874 0.91500 0.90595 0.95067 0.97764 1.00858 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 9.20 71.23 0.66 -1.59 16 2 C -0.41 -13.67 5.76 -20.22 -0.12 -13.79 16 3 C 0.29 6.29 6.70 41.09 0.28 6.57 16 4 N -0.82 -9.48 8.80 -47.57 -0.42 -9.90 16 5 C -0.09 -1.71 5.61 29.84 0.17 -1.54 16 6 C -0.10 -2.90 4.79 30.70 0.15 -2.76 16 7 C -0.11 -4.61 0.54 -52.87 -0.03 -4.64 16 8 C -0.11 -4.21 7.94 71.98 0.57 -3.64 16 9 C 0.05 2.75 3.97 29.85 0.12 2.87 16 10 C -0.48 -30.30 6.77 25.60 0.17 -30.12 16 11 H 0.05 3.48 5.50 -2.91 -0.02 3.46 16 12 C -0.01 -0.86 5.46 84.66 0.46 -0.40 16 13 N -0.94 -62.35 13.29 21.45 0.28 -62.06 16 14 Si 0.95 50.59 29.54 68.60 2.03 52.61 16 15 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 16 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 17 H -0.26 -13.30 7.11 99.48 0.71 -12.59 16 18 C 0.40 18.11 5.67 26.07 0.15 18.26 16 19 O -0.53 -30.38 13.51 -3.81 -0.05 -30.43 16 20 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 21 H 0.08 1.66 6.32 -2.38 -0.02 1.65 16 22 H 0.03 1.02 7.51 -2.38 -0.02 1.00 16 23 H 0.41 4.31 6.45 -92.70 -0.60 3.71 16 24 H 0.42 1.78 8.83 -92.71 -0.82 0.96 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.12 1.76 6.60 -2.39 -0.02 1.74 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.16 6.53 -2.38 -0.02 2.15 16 31 H 0.03 1.37 6.63 -2.39 -0.02 1.35 16 32 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 33 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 34 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -86.85 268.52 4.12 -82.73 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: -0.30 Total: -2.17 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 2.57 Total: -30.78 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -0.13 Total: -71.96 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.43 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.03 Total: 52.61 kcal Total: -86.85 4.12 -82.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.614 kcal (2) G-P(sol) polarization free energy of solvation -86.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds