Wall clock time and date at job start Mon Mar 30 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48500 * 109.47348 * 273.59246 * 3 2 1 5 5 H 1.48496 * 109.47267 * 33.59534 * 3 2 1 6 6 H 1.48498 * 109.46907 * 153.59158 * 3 2 1 7 7 C 1.37872 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99412 * 354.44535 * 7 2 1 9 9 C 1.50694 * 120.00267 * 174.72092 * 7 2 1 10 10 C 1.53008 * 115.54992 * 91.38764 * 9 7 2 11 11 N 1.46497 * 109.46950 * 56.84234 * 10 9 7 12 12 C 1.45760 * 117.94543 * 266.45662 * 11 10 9 13 13 C 1.53107 * 110.38268 * 160.74413 * 12 11 10 14 14 C 1.53338 * 108.52869 * 51.11502 * 13 12 11 15 15 C 1.53069 * 108.42632 * 292.30395 * 14 13 12 16 16 C 1.33354 * 117.94725 * 86.71580 * 11 10 9 17 17 O 1.21279 * 118.24509 * 2.20354 * 16 11 10 18 18 C 1.53001 * 117.49890 * 305.72094 * 9 7 2 19 19 C 1.52998 * 117.50279 * 237.05658 * 9 7 2 20 20 H 0.97006 * 120.00071 * 0.02562 * 1 2 3 21 21 H 1.08991 * 109.46862 * 176.84096 * 10 9 7 22 22 H 1.08998 * 109.46773 * 296.84178 * 10 9 7 23 23 H 1.08993 * 109.29849 * 281.23378 * 12 11 10 24 24 H 1.08999 * 109.29922 * 40.61538 * 12 11 10 25 25 H 1.08999 * 109.80596 * 291.32065 * 13 12 11 26 26 H 1.09003 * 109.67189 * 170.82671 * 13 12 11 27 27 H 1.09003 * 109.67429 * 172.57187 * 14 13 12 28 28 H 1.09004 * 109.68161 * 52.04171 * 14 13 12 29 29 H 1.08999 * 109.40456 * 288.77711 * 15 14 13 30 30 H 1.08998 * 109.33394 * 168.98916 * 15 14 13 31 31 H 1.08997 * 117.49986 * 359.97438 * 18 9 7 32 32 H 1.09003 * 117.50036 * 145.02038 * 18 9 7 33 33 H 1.08998 * 117.50222 * 214.97631 * 19 9 7 34 34 H 1.09007 * 117.49503 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4206 2.0904 -1.3973 5 1 1.4866 2.6295 0.7747 6 1 3.5826 1.4195 0.6227 7 6 2.0046 -1.1940 -0.0005 8 1 1.4683 -2.1271 0.0896 9 6 3.5067 -1.1967 -0.1206 10 6 4.2746 -1.1684 1.2026 11 7 3.8661 -2.3072 2.0286 12 6 2.7952 -2.1004 2.9956 13 6 2.1846 -3.4418 3.4102 14 6 3.3185 -4.3833 3.8335 15 6 4.1518 -4.7242 2.5955 16 6 4.5008 -3.4667 1.8524 17 8 5.4081 -3.5080 1.0487 18 6 4.1217 -0.4567 -1.3102 19 6 4.1216 -1.9871 -1.2773 20 1 -0.4850 0.8401 -0.0004 21 1 5.3443 -1.2294 1.0031 22 1 4.0556 -0.2399 1.7299 23 1 3.1962 -1.5960 3.8747 24 1 2.0211 -1.4771 2.5481 25 1 1.6427 -3.8763 2.5702 26 1 1.5025 -3.2915 4.2470 27 1 2.8990 -5.2962 4.2562 28 1 3.9475 -3.8904 4.5748 29 1 3.5785 -5.3830 1.9433 30 1 5.0676 -5.2281 2.9045 31 1 3.4397 0.0318 -2.0061 32 1 5.0735 0.0500 -1.1503 33 1 5.0733 -2.4866 -1.0959 34 1 3.4395 -2.5055 -1.9513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:36 Heat of formation + Delta-G solvation = -16.526060 kcal Electronic energy + Delta-G solvation = -16225.860275 eV Core-core repulsion = 13738.197402 eV Total energy + Delta-G solvation = -2487.662873 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88617 -36.70074 -35.82909 -33.06791 -32.07378 -29.15104 -26.71584 -25.41698 -23.67882 -21.80583 -21.45941 -19.02601 -18.07313 -16.53084 -15.84176 -15.55786 -15.18362 -14.64095 -13.98304 -13.71847 -13.46736 -13.03562 -12.73642 -12.60993 -12.32290 -11.79524 -11.34349 -11.04559 -10.82180 -10.72644 -10.68772 -10.51613 -10.32546 -10.11303 -9.65959 -9.07452 -8.86333 -8.66823 -8.36725 -7.81397 -6.12257 -4.12160 3.27352 3.29072 3.37624 3.41620 3.74379 4.41287 4.95954 5.04715 5.06014 5.09875 5.18877 5.26236 5.71866 5.72993 5.91996 5.93659 6.02754 6.05404 6.15835 6.16024 6.26649 6.40819 6.47298 6.56471 6.62598 6.65764 6.93325 7.10282 7.24303 7.32038 7.78479 8.25265 8.53245 8.86618 8.91094 9.51904 10.99200 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030452 B = 0.011814 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.256671 B = 2369.444190 C = 2859.863466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.074 0.926 9 C -0.016 4.016 10 C 0.143 3.857 11 N -0.572 5.572 12 C 0.111 3.889 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.512 3.488 17 O -0.567 6.567 18 C -0.202 4.202 19 C -0.171 4.171 20 H 0.263 0.737 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -4.602 7.826 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.126 4.126 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.513 4.513 8 H 0.092 0.908 9 C -0.018 4.018 10 C 0.020 3.980 11 N -0.302 5.302 12 C -0.013 4.013 13 C -0.171 4.171 14 C -0.160 4.160 15 C -0.172 4.172 16 C 0.300 3.700 17 O -0.448 6.448 18 C -0.240 4.240 19 C -0.208 4.208 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.120 0.880 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.526 -4.509 7.449 10.313 hybrid contribution 0.173 1.007 -0.104 1.027 sum 5.699 -3.502 7.345 9.934 Atomic orbital electron populations 1.69911 1.06271 1.26975 1.50524 1.24971 0.94526 0.98875 0.94246 0.86871 0.80553 0.83500 0.78394 1.20603 1.22281 1.18354 1.20186 0.86704 0.94198 1.50178 0.90773 1.19760 0.95407 1.00356 0.86228 1.21270 0.97454 0.87174 0.92072 1.46994 1.35157 1.10693 1.37343 1.21510 0.90779 0.97801 0.91161 1.21863 0.97629 0.95528 1.02046 1.21660 0.97392 0.99948 0.96960 1.21609 1.01794 0.96190 0.97620 1.19904 0.82153 0.84819 0.83170 1.90630 1.31612 1.85129 1.37431 1.22912 1.01034 0.95273 1.04734 1.22858 1.01631 0.92427 1.03927 0.92674 0.91951 0.91337 0.93131 0.88004 0.90589 0.90493 0.91295 0.91657 0.88795 0.89195 0.89689 0.91132 0.89744 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.13 24.84 -169.99 -4.22 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -5.88 5.68 56.52 0.32 -5.56 16 7 C -0.48 -12.70 7.67 -34.44 -0.26 -12.96 16 8 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 9 C -0.02 -0.37 1.04 -155.66 -0.16 -0.54 16 10 C 0.14 3.06 4.90 -4.04 -0.02 3.04 16 11 N -0.57 -11.09 2.65 -174.85 -0.46 -11.55 16 12 C 0.11 1.86 6.06 -4.39 -0.03 1.83 16 13 C -0.13 -1.84 6.03 -26.50 -0.16 -2.00 16 14 C -0.12 -1.45 6.03 -26.52 -0.16 -1.61 16 15 C -0.13 -1.88 6.03 -28.10 -0.17 -2.05 16 16 C 0.51 9.77 7.43 -11.87 -0.09 9.68 16 17 O -0.57 -12.65 14.63 5.56 0.08 -12.57 16 18 C -0.20 -4.54 7.54 -26.69 -0.20 -4.74 16 19 C -0.17 -3.91 9.56 -26.69 -0.26 -4.17 16 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.06 1.34 7.21 -51.93 -0.37 0.97 16 22 H 0.07 1.43 6.53 -51.93 -0.34 1.09 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.10 2.03 6.77 -51.93 -0.35 1.68 16 25 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.99 7.04 -51.93 -0.37 1.62 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.92 6.92 -51.93 -0.36 1.56 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -30.42 267.81 -6.63 -37.05 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.23 Total: 3.08 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.60 Total: -11.53 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.31 Total: -36.97 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.22 Total: 16.91 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.42 -6.63 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.522 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds