Wall clock time and date at job start Mon Mar 30 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48500 * 109.47348 * 273.59246 * 3 2 1 5 5 H 1.48496 * 109.47267 * 33.59534 * 3 2 1 6 6 H 1.48498 * 109.46907 * 153.59158 * 3 2 1 7 7 C 1.37872 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99412 * 354.44535 * 7 2 1 9 9 C 1.50694 * 120.00267 * 174.72092 * 7 2 1 10 10 C 1.53008 * 115.54992 * 91.38764 * 9 7 2 11 11 N 1.46497 * 109.46950 * 56.84234 * 10 9 7 12 12 C 1.45760 * 117.94543 * 266.45662 * 11 10 9 13 13 C 1.53107 * 110.38268 * 160.74413 * 12 11 10 14 14 C 1.53338 * 108.52869 * 51.11502 * 13 12 11 15 15 C 1.53069 * 108.42632 * 292.30395 * 14 13 12 16 16 C 1.33354 * 117.94725 * 86.71580 * 11 10 9 17 17 O 1.21279 * 118.24509 * 2.20354 * 16 11 10 18 18 C 1.53001 * 117.49890 * 305.72094 * 9 7 2 19 19 C 1.52998 * 117.50279 * 237.05658 * 9 7 2 20 20 H 0.97006 * 120.00071 * 0.02562 * 1 2 3 21 21 H 1.08991 * 109.46862 * 176.84096 * 10 9 7 22 22 H 1.08998 * 109.46773 * 296.84178 * 10 9 7 23 23 H 1.08993 * 109.29849 * 281.23378 * 12 11 10 24 24 H 1.08999 * 109.29922 * 40.61538 * 12 11 10 25 25 H 1.08999 * 109.80596 * 291.32065 * 13 12 11 26 26 H 1.09003 * 109.67189 * 170.82671 * 13 12 11 27 27 H 1.09003 * 109.67429 * 172.57187 * 14 13 12 28 28 H 1.09004 * 109.68161 * 52.04171 * 14 13 12 29 29 H 1.08999 * 109.40456 * 288.77711 * 15 14 13 30 30 H 1.08998 * 109.33394 * 168.98916 * 15 14 13 31 31 H 1.08997 * 117.49986 * 359.97438 * 18 9 7 32 32 H 1.09003 * 117.50036 * 145.02038 * 18 9 7 33 33 H 1.08998 * 117.50222 * 214.97631 * 19 9 7 34 34 H 1.09007 * 117.49503 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4206 2.0904 -1.3973 5 1 1.4866 2.6295 0.7747 6 1 3.5826 1.4195 0.6227 7 6 2.0046 -1.1940 -0.0005 8 1 1.4683 -2.1271 0.0896 9 6 3.5067 -1.1967 -0.1206 10 6 4.2746 -1.1684 1.2026 11 7 3.8661 -2.3072 2.0286 12 6 2.7952 -2.1004 2.9956 13 6 2.1846 -3.4418 3.4102 14 6 3.3185 -4.3833 3.8335 15 6 4.1518 -4.7242 2.5955 16 6 4.5008 -3.4667 1.8524 17 8 5.4081 -3.5080 1.0487 18 6 4.1217 -0.4567 -1.3102 19 6 4.1216 -1.9871 -1.2773 20 1 -0.4850 0.8401 -0.0004 21 1 5.3443 -1.2294 1.0031 22 1 4.0556 -0.2399 1.7299 23 1 3.1962 -1.5960 3.8747 24 1 2.0211 -1.4771 2.5481 25 1 1.6427 -3.8763 2.5702 26 1 1.5025 -3.2915 4.2470 27 1 2.8990 -5.2962 4.2562 28 1 3.9475 -3.8904 4.5748 29 1 3.5785 -5.3830 1.9433 30 1 5.0676 -5.2281 2.9045 31 1 3.4397 0.0318 -2.0061 32 1 5.0735 0.0500 -1.1503 33 1 5.0733 -2.4866 -1.0959 34 1 3.4395 -2.5055 -1.9513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:36 Heat of formation + Delta-G solvation = -35.652876 kcal Electronic energy + Delta-G solvation = -16226.689676 eV Core-core repulsion = 13738.197402 eV Total energy + Delta-G solvation = -2488.492274 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36556 -38.51153 -37.22322 -34.47884 -34.16031 -30.43657 -28.47084 -27.31033 -25.02504 -23.31541 -23.07657 -20.90845 -19.46394 -18.37040 -17.32279 -17.21927 -16.74322 -16.47110 -15.40264 -15.06456 -14.96519 -14.76025 -14.32344 -14.13521 -13.98992 -13.43702 -13.05430 -12.69959 -12.42460 -12.22891 -12.04237 -12.00408 -11.76155 -11.71862 -11.56818 -10.86495 -10.75644 -10.52347 -10.22530 -9.41184 -8.26305 -6.29971 1.36124 1.40557 1.51837 1.81002 2.28829 2.39390 3.07781 3.24515 3.77041 3.98321 4.00338 4.04067 4.12564 4.33987 4.40879 4.56574 4.59374 4.69848 4.78793 4.82209 4.88502 4.97841 5.01866 5.07656 5.09534 5.25141 5.29620 5.42625 5.45117 5.68564 5.74601 6.34677 6.72043 6.80831 7.35814 7.38446 8.88558 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030452 B = 0.011814 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.256671 B = 2369.444190 C = 2859.863466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.234 1.234 7 C -0.466 4.466 8 H 0.029 0.971 9 C -0.030 4.030 10 C 0.146 3.854 11 N -0.578 5.578 12 C 0.107 3.893 13 C -0.129 4.129 14 C -0.110 4.110 15 C -0.128 4.128 16 C 0.500 3.500 17 O -0.605 6.605 18 C -0.191 4.191 19 C -0.168 4.168 20 H 0.265 0.735 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -4.550 9.430 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.157 1.157 7 C -0.504 4.504 8 H 0.048 0.952 9 C -0.032 4.032 10 C 0.023 3.977 11 N -0.307 5.307 12 C -0.016 4.016 13 C -0.167 4.167 14 C -0.147 4.147 15 C -0.167 4.167 16 C 0.290 3.710 17 O -0.488 6.488 18 C -0.229 4.229 19 C -0.205 4.205 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.973 -4.474 9.072 12.287 hybrid contribution -0.335 0.913 -0.641 1.165 sum 6.639 -3.561 8.432 11.307 Atomic orbital electron populations 1.70035 1.08023 1.27882 1.52361 1.25645 0.95059 1.02151 0.93942 0.86000 0.80475 0.79240 0.78548 1.20456 1.22156 1.15710 1.20107 0.88391 0.92444 1.49413 0.95243 1.19769 0.93788 1.01697 0.87899 1.21105 0.97037 0.88436 0.91144 1.47158 1.35631 1.10491 1.37419 1.21618 0.89410 0.99391 0.91132 1.21858 0.98621 0.94209 1.02033 1.21637 0.96246 1.00856 0.95963 1.21663 1.03292 0.93544 0.98243 1.20843 0.81362 0.85831 0.82961 1.90599 1.33292 1.85762 1.39182 1.22962 1.01797 0.94819 1.03278 1.22746 1.01361 0.92995 1.03380 0.92609 0.91842 0.90844 0.90263 0.91894 0.93120 0.87848 0.88070 0.90103 0.88559 0.87152 0.90606 0.88379 0.89364 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 13.96 21.45 0.30 -56.11 16 2 C 0.03 1.65 5.47 84.65 0.46 2.12 16 3 Si 0.93 42.95 24.84 68.60 1.70 44.66 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.23 -9.77 5.68 99.48 0.57 -9.20 16 7 C -0.47 -25.53 7.67 25.60 0.20 -25.34 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 9 C -0.03 -1.40 1.04 -52.93 -0.06 -1.46 16 10 C 0.15 6.11 4.90 86.38 0.42 6.53 16 11 N -0.58 -21.90 2.65 -826.27 -2.19 -24.09 16 12 C 0.11 3.49 6.06 86.55 0.52 4.02 16 13 C -0.13 -3.35 6.03 30.74 0.19 -3.16 16 14 C -0.11 -2.20 6.03 30.73 0.19 -2.02 16 15 C -0.13 -3.33 6.03 29.71 0.18 -3.15 16 16 C 0.50 18.54 7.43 87.71 0.65 19.19 16 17 O -0.60 -26.56 14.63 -3.02 -0.04 -26.60 16 18 C -0.19 -8.30 7.54 30.62 0.23 -8.07 16 19 C -0.17 -7.63 9.56 30.62 0.29 -7.33 16 20 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 21 H 0.06 2.63 7.21 -2.39 -0.02 2.61 16 22 H 0.07 2.94 6.53 -2.39 -0.02 2.93 16 23 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.06 2.56 6.77 -2.39 -0.02 2.54 16 25 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 3.44 7.04 -2.39 -0.02 3.43 16 32 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 33 H 0.09 3.97 6.92 -2.39 -0.02 3.95 16 34 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -67.05 267.81 3.97 -63.08 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.93 Total: 17.74 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 3.28 Total: -18.67 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -1.89 Total: -80.20 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.04 Total: -26.60 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.70 Total: 44.66 kcal Total: -67.05 3.97 -63.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.424 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds