Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99845 * 2 1 4 4 H 1.48498 * 109.47367 * 270.00036 * 3 2 1 5 5 H 1.48497 * 109.47146 * 30.00299 * 3 2 1 6 6 H 1.48503 * 109.46873 * 150.00207 * 3 2 1 7 7 C 1.37874 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00181 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47134 * 185.00454 * 9 7 2 11 11 H 1.08990 * 109.87513 * 306.39142 * 10 9 7 12 12 C 1.54321 * 109.88208 * 67.57215 * 10 9 7 13 13 C 1.55152 * 102.94664 * 141.60712 * 12 10 9 14 14 C 1.54918 * 101.58175 * 324.49837 * 13 12 10 15 15 N 1.47022 * 109.87834 * 185.37354 * 10 9 7 16 16 C 1.34782 * 125.64711 * 61.68696 * 15 10 9 17 17 O 1.21282 * 120.00072 * 355.06092 * 16 15 10 18 18 C 1.50704 * 119.99818 * 175.07143 * 16 15 10 19 19 C 1.52995 * 117.49273 * 248.61432 * 18 16 15 20 20 C 1.53002 * 60.00234 * 252.51388 * 19 18 16 21 21 H 0.97000 * 120.00558 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46970 * 65.00133 * 9 7 2 23 23 H 1.09004 * 109.47119 * 305.00416 * 9 7 2 24 24 H 1.09006 * 110.72318 * 23.24368 * 12 10 9 25 25 H 1.08997 * 110.71661 * 259.97353 * 12 10 9 26 26 H 1.08998 * 111.01081 * 206.42538 * 13 12 10 27 27 H 1.09003 * 111.00317 * 82.56844 * 13 12 10 28 28 H 1.08992 * 110.36692 * 155.84730 * 14 13 12 29 29 H 1.09001 * 110.36248 * 278.16943 * 14 13 12 30 30 H 1.08990 * 115.55090 * 34.32329 * 18 16 15 31 31 H 1.09004 * 117.50385 * 0.02562 * 19 18 16 32 32 H 1.09002 * 117.49810 * 145.02415 * 19 18 16 33 33 H 1.09001 * 117.49833 * 252.51353 * 20 19 18 34 34 H 1.08992 * 117.51955 * 107.48569 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2407 -3.6593 0.1247 11 1 3.0039 -3.5805 -0.6494 12 6 2.8995 -3.6389 1.5200 13 6 2.9943 -5.1446 1.8817 14 6 1.6931 -5.6989 1.2496 15 7 1.5290 -4.9394 -0.0032 16 6 0.8413 -5.3509 -1.0869 17 8 0.6973 -4.6057 -2.0328 18 6 0.2510 -6.7371 -1.1230 19 6 0.8631 -7.7401 -2.1029 20 6 -0.5185 -7.1446 -2.3812 21 1 -0.4851 0.8400 0.0004 22 1 0.6929 -2.5964 -0.9318 23 1 0.5592 -2.5193 0.8415 24 1 2.2707 -3.1092 2.2358 25 1 3.8919 -3.1907 1.4713 26 1 2.9954 -5.2877 2.9623 27 1 3.8742 -5.6008 1.4279 28 1 1.7977 -6.7628 1.0374 29 1 0.8454 -5.5249 1.9124 30 1 -0.1070 -7.1206 -0.1677 31 1 1.6930 -7.3975 -2.7211 32 1 0.9080 -8.7839 -1.7922 33 1 -1.3826 -7.7966 -2.2535 34 1 -0.5982 -6.4100 -3.1824 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084453378.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = -41.438204 kcal Electronic energy + Delta-G solvation = -15523.097359 eV Core-core repulsion = 13034.354214 eV Total energy + Delta-G solvation = -2488.743145 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22339 -38.86963 -36.87277 -35.26496 -32.67173 -32.01564 -27.98855 -26.17175 -24.66607 -23.32097 -22.92155 -21.46739 -19.68475 -18.69374 -18.25751 -17.18115 -16.61848 -16.04012 -15.87030 -15.13520 -14.68139 -14.49550 -14.16611 -13.97221 -13.57393 -13.42635 -12.94140 -12.78039 -12.55531 -12.42958 -12.18182 -11.96499 -11.60080 -11.50856 -11.43612 -11.34307 -11.30802 -10.75104 -10.52059 -9.50474 -8.21854 -6.34004 1.36076 1.39664 1.50092 1.55734 2.09875 2.40071 2.93994 3.11069 3.54917 3.76922 3.84105 3.99768 4.00820 4.14928 4.25263 4.39258 4.59822 4.70674 4.72822 4.87958 4.88226 4.99264 5.05515 5.11417 5.22003 5.23694 5.27962 5.45221 5.49248 5.66000 5.86454 6.16883 6.70337 6.82878 7.28518 7.34745 8.91001 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033190 B = 0.007701 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.425856 B = 3635.007531 C = 4219.759363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.029 3.971 10 C 0.141 3.859 11 H 0.040 0.960 12 C -0.110 4.110 13 C -0.119 4.119 14 C 0.094 3.906 15 N -0.616 5.616 16 C 0.532 3.468 17 O -0.597 6.597 18 C -0.197 4.197 19 C -0.127 4.127 20 C -0.157 4.157 21 H 0.262 0.738 22 H -0.021 1.021 23 H -0.012 1.012 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -17.438 4.378 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.571 4.571 8 H 0.083 0.917 9 C -0.009 4.009 10 C 0.037 3.963 11 H 0.058 0.942 12 C -0.148 4.148 13 C -0.156 4.156 14 C -0.028 4.028 15 N -0.348 5.348 16 C 0.323 3.677 17 O -0.478 6.478 18 C -0.217 4.217 19 C -0.164 4.164 20 C -0.194 4.194 21 H 0.071 0.929 22 H -0.003 1.003 23 H 0.007 0.993 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.106 0.894 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.367 -16.976 3.847 17.946 hybrid contribution -0.160 1.610 -0.373 1.660 sum 4.208 -15.367 3.473 16.306 Atomic orbital electron populations 1.70150 1.08175 1.27707 1.51759 1.26071 0.95748 1.03707 0.94656 0.85367 0.78919 0.77949 0.78321 1.20383 1.20497 1.17730 1.21517 0.93439 0.91681 1.50447 0.91708 1.19210 0.94285 0.93171 0.94245 1.21626 0.93354 0.83061 0.98209 0.94179 1.22491 1.00673 0.98112 0.93522 1.22825 0.96997 0.93146 1.02658 1.22626 0.98824 0.97301 0.84000 1.48776 1.51234 1.19314 1.15471 1.20335 0.77386 0.89106 0.80910 1.90689 1.60924 1.57828 1.38359 1.22216 1.08457 0.91925 0.99129 1.23035 0.96111 0.98490 0.98795 1.23021 0.97060 1.02820 0.96523 0.92888 1.00284 0.99325 0.91908 0.89996 0.86979 0.89400 0.87199 0.91293 0.83117 0.89983 0.83703 0.84785 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.18 13.29 21.45 0.28 -60.89 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.53 -32.14 8.66 25.60 0.22 -31.92 16 8 H 0.06 3.68 7.75 -2.91 -0.02 3.65 16 9 C 0.03 1.69 4.45 29.85 0.13 1.82 16 10 C 0.14 6.37 2.87 45.34 0.13 6.50 16 11 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 12 C -0.11 -3.81 6.03 31.78 0.19 -3.62 16 13 C -0.12 -2.70 7.09 31.99 0.23 -2.47 16 14 C 0.09 2.36 6.52 86.86 0.57 2.93 16 15 N -0.62 -23.62 3.06 -788.05 -2.41 -26.03 16 16 C 0.53 21.77 7.45 87.66 0.65 22.43 16 17 O -0.60 -31.73 15.05 -3.04 -0.05 -31.78 16 18 C -0.20 -5.27 5.29 -11.54 -0.06 -5.33 16 19 C -0.13 -2.59 10.23 30.59 0.31 -2.27 16 20 C -0.16 -3.83 10.04 30.60 0.31 -3.53 16 21 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 22 H -0.02 -1.47 6.55 -2.39 -0.02 -1.48 16 23 H -0.01 -0.73 8.01 -2.38 -0.02 -0.75 16 24 H 0.06 2.39 7.76 -2.38 -0.02 2.37 16 25 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 1.91 7.49 -2.39 -0.02 1.89 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.15 3.02 7.61 -2.39 -0.02 3.00 16 31 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.33 7.67 -2.39 -0.02 2.31 16 Total: -1.00 -82.81 282.64 4.06 -78.75 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.06 Total: 6.89 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 3.14 Total: -15.28 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.13 Total: -86.93 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -82.81 4.06 -78.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453378.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.312 kcal (2) G-P(sol) polarization free energy of solvation -82.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds