Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99532 * 2 1 4 4 H 1.48503 * 109.46889 * 270.00057 * 3 2 1 5 5 H 1.48499 * 109.46947 * 30.00001 * 3 2 1 6 6 H 1.48498 * 109.46806 * 150.00227 * 3 2 1 7 7 C 1.37872 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47151 * 174.95333 * 9 7 2 11 11 H 1.08998 * 109.87269 * 53.54221 * 10 9 7 12 12 C 1.54317 * 109.88360 * 292.36097 * 10 9 7 13 13 C 1.55158 * 102.94365 * 218.39023 * 12 10 9 14 14 C 1.54904 * 101.58005 * 35.50548 * 13 12 10 15 15 N 1.47024 * 109.88002 * 174.55395 * 10 9 7 16 16 C 1.34774 * 125.65292 * 298.39508 * 15 10 9 17 17 O 1.21282 * 119.99526 * 4.91786 * 16 15 10 18 18 C 1.50698 * 120.00349 * 184.91576 * 16 15 10 19 19 C 1.52998 * 117.49927 * 248.74750 * 18 16 15 20 20 C 1.53005 * 117.49827 * 180.08914 * 18 16 15 21 21 H 0.96995 * 120.00447 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46762 * 294.96004 * 9 7 2 23 23 H 1.09003 * 109.46698 * 54.95357 * 9 7 2 24 24 H 1.09001 * 110.72454 * 336.75952 * 12 10 9 25 25 H 1.09006 * 110.71806 * 100.02596 * 12 10 9 26 26 H 1.08999 * 111.00585 * 277.42987 * 13 12 10 27 27 H 1.09003 * 111.03433 * 153.59619 * 13 12 10 28 28 H 1.08999 * 110.36567 * 204.15272 * 14 13 12 29 29 H 1.09000 * 110.45850 * 81.87678 * 14 13 12 30 30 H 1.08996 * 115.54575 * 34.41998 * 18 16 15 31 31 H 1.09001 * 117.50061 * 0.02562 * 19 18 16 32 32 H 1.08995 * 117.49929 * 145.01991 * 19 18 16 33 33 H 1.09000 * 117.49314 * 214.98485 * 20 18 16 34 34 H 1.08999 * 117.49770 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2406 -3.6592 -0.1281 11 1 3.0057 -3.5802 0.6443 12 6 2.8963 -3.6386 -1.5249 13 6 2.9905 -5.1444 -1.8868 14 6 1.6908 -5.6987 -1.2518 15 7 1.5295 -4.9394 0.0015 16 6 0.8431 -5.3505 1.0861 17 8 0.7003 -4.6047 2.0318 18 6 0.2531 -6.7367 1.1237 19 6 -1.2716 -6.8568 1.0816 20 6 -0.5166 -7.1429 2.3821 21 1 -0.4850 0.8400 -0.0004 22 1 0.6944 -2.5972 0.9313 23 1 0.5582 -2.5186 -0.8416 24 1 2.2658 -3.1090 -2.2391 25 1 3.8888 -3.1903 -1.4785 26 1 3.8714 -5.6005 -1.4350 27 1 2.9895 -5.2879 -2.9673 28 1 1.7961 -6.7627 -1.0398 29 1 0.8407 -5.5264 -1.9119 30 1 0.8330 -7.5082 0.6174 31 1 -1.8479 -5.9333 1.0263 32 1 -1.6948 -7.7077 0.5479 33 1 -0.4433 -8.1819 2.7034 34 1 -0.5958 -6.4077 3.1829 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084453380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -18.297719 kcal Electronic energy + Delta-G solvation = -15544.491985 eV Core-core repulsion = 13056.752287 eV Total energy + Delta-G solvation = -2487.739698 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74284 -37.46610 -35.54468 -33.08579 -31.12334 -30.23876 -26.10317 -24.79266 -22.76544 -22.32517 -21.57034 -19.99140 -18.16140 -17.10057 -16.46124 -15.49734 -14.98546 -14.56025 -14.24953 -13.78768 -13.00795 -12.97628 -12.76124 -12.11220 -12.06632 -11.82825 -11.45156 -11.14469 -10.94433 -10.78330 -10.64870 -10.46212 -10.31897 -10.28501 -9.91522 -9.47681 -9.37030 -8.88771 -8.25755 -7.88431 -5.92602 -3.94656 2.99821 3.35398 3.41287 3.44249 3.50390 4.07779 4.51487 4.75942 4.91135 4.96721 5.03202 5.16680 5.27891 5.41702 5.43297 5.66376 5.75253 5.84728 5.87790 5.97349 6.08146 6.17459 6.25161 6.30563 6.54165 6.80810 6.94535 7.04206 7.75506 7.90439 8.13394 8.17338 8.47162 8.79679 9.12783 9.67682 11.18937 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.007953 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.315151 B = 3519.863322 C = 4129.905018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.016 3.984 10 C 0.139 3.861 11 H 0.062 0.938 12 C -0.113 4.113 13 C -0.138 4.138 14 C 0.103 3.897 15 N -0.611 5.611 16 C 0.549 3.451 17 O -0.529 6.529 18 C -0.188 4.188 19 C -0.155 4.155 20 C -0.151 4.151 21 H 0.259 0.741 22 H 0.033 0.967 23 H 0.018 0.982 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -14.876 -3.164 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.037 3.963 11 H 0.080 0.920 12 C -0.151 4.151 13 C -0.176 4.176 14 C -0.021 4.021 15 N -0.344 5.344 16 C 0.337 3.663 17 O -0.406 6.406 18 C -0.209 4.209 19 C -0.192 4.192 20 C -0.189 4.189 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.773 -14.370 -2.577 14.706 hybrid contribution 0.480 0.899 -0.178 1.034 sum 2.253 -13.471 -2.755 13.934 Atomic orbital electron populations 1.69984 1.06049 1.26426 1.50793 1.24990 0.94799 0.99115 0.95448 0.86607 0.79877 0.83638 0.77947 1.20740 1.21276 1.19894 1.21105 0.92824 0.90755 1.50626 0.92717 1.19450 0.93976 0.90327 0.98433 1.21924 0.95095 0.83280 0.95969 0.92012 1.22592 1.01398 0.94133 0.96954 1.22819 0.96830 0.97625 1.00359 1.22228 0.98038 0.95436 0.86361 1.48620 1.52209 1.20010 1.13611 1.19149 0.78185 0.87231 0.81732 1.90728 1.58435 1.55552 1.35838 1.22209 0.96108 0.96769 1.05816 1.22918 0.91545 1.03745 1.01014 1.22930 1.01860 1.02320 0.91763 0.93102 0.94830 0.96404 0.90132 0.90767 0.91309 0.90525 0.91575 0.91677 0.86486 0.88095 0.88197 0.88345 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.86 13.29 55.43 0.74 -27.12 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.89 8.66 -34.44 -0.30 -15.19 16 8 H 0.05 1.52 7.75 -52.49 -0.41 1.11 16 9 C 0.02 0.43 4.45 -27.88 -0.12 0.31 16 10 C 0.14 3.03 2.87 -66.96 -0.19 2.84 16 11 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 12 C -0.11 -1.99 6.03 -24.90 -0.15 -2.14 16 13 C -0.14 -1.83 7.08 -24.58 -0.17 -2.00 16 14 C 0.10 1.45 6.74 -2.53 -0.02 1.43 16 15 N -0.61 -11.62 3.06 -163.03 -0.50 -12.12 16 16 C 0.55 10.89 7.45 -10.99 -0.08 10.81 16 17 O -0.53 -13.01 15.05 5.56 0.08 -12.93 16 18 C -0.19 -2.68 5.50 -91.77 -0.50 -3.19 16 19 C -0.15 -1.95 10.24 -26.69 -0.27 -2.23 16 20 C -0.15 -1.94 10.05 -26.69 -0.27 -2.21 16 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.03 1.05 6.54 -51.93 -0.34 0.71 16 23 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 24 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.74 6.96 -51.93 -0.36 0.38 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.35 7.11 -51.93 -0.37 0.98 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.61 7.67 -51.93 -0.40 1.21 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -34.14 282.02 -7.84 -41.98 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.21 Total: -1.25 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.18 Total: -9.97 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.24 Total: -39.24 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.14 -7.84 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.685 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds