Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99532 * 2 1 4 4 H 1.48503 * 109.46889 * 270.00057 * 3 2 1 5 5 H 1.48499 * 109.46947 * 30.00001 * 3 2 1 6 6 H 1.48498 * 109.46806 * 150.00227 * 3 2 1 7 7 C 1.37872 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47151 * 174.95333 * 9 7 2 11 11 H 1.08998 * 109.87269 * 53.54221 * 10 9 7 12 12 C 1.54317 * 109.88360 * 292.36097 * 10 9 7 13 13 C 1.55158 * 102.94365 * 218.39023 * 12 10 9 14 14 C 1.54904 * 101.58005 * 35.50548 * 13 12 10 15 15 N 1.47024 * 109.88002 * 174.55395 * 10 9 7 16 16 C 1.34774 * 125.65292 * 298.39508 * 15 10 9 17 17 O 1.21282 * 119.99526 * 4.91786 * 16 15 10 18 18 C 1.50698 * 120.00349 * 184.91576 * 16 15 10 19 19 C 1.52998 * 117.49927 * 248.74750 * 18 16 15 20 20 C 1.53005 * 117.49827 * 180.08914 * 18 16 15 21 21 H 0.96995 * 120.00447 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46762 * 294.96004 * 9 7 2 23 23 H 1.09003 * 109.46698 * 54.95357 * 9 7 2 24 24 H 1.09001 * 110.72454 * 336.75952 * 12 10 9 25 25 H 1.09006 * 110.71806 * 100.02596 * 12 10 9 26 26 H 1.08999 * 111.00585 * 277.42987 * 13 12 10 27 27 H 1.09003 * 111.03433 * 153.59619 * 13 12 10 28 28 H 1.08999 * 110.36567 * 204.15272 * 14 13 12 29 29 H 1.09000 * 110.45850 * 81.87678 * 14 13 12 30 30 H 1.08996 * 115.54575 * 34.41998 * 18 16 15 31 31 H 1.09001 * 117.50061 * 0.02562 * 19 18 16 32 32 H 1.08995 * 117.49929 * 145.01991 * 19 18 16 33 33 H 1.09000 * 117.49314 * 214.98485 * 20 18 16 34 34 H 1.08999 * 117.49770 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2406 -3.6592 -0.1281 11 1 3.0057 -3.5802 0.6443 12 6 2.8963 -3.6386 -1.5249 13 6 2.9905 -5.1444 -1.8868 14 6 1.6908 -5.6987 -1.2518 15 7 1.5295 -4.9394 0.0015 16 6 0.8431 -5.3505 1.0861 17 8 0.7003 -4.6047 2.0318 18 6 0.2531 -6.7367 1.1237 19 6 -1.2716 -6.8568 1.0816 20 6 -0.5166 -7.1429 2.3821 21 1 -0.4850 0.8400 -0.0004 22 1 0.6944 -2.5972 0.9313 23 1 0.5582 -2.5186 -0.8416 24 1 2.2658 -3.1090 -2.2391 25 1 3.8888 -3.1903 -1.4785 26 1 3.8714 -5.6005 -1.4350 27 1 2.9895 -5.2879 -2.9673 28 1 1.7961 -6.7627 -1.0398 29 1 0.8407 -5.5264 -1.9119 30 1 0.8330 -7.5082 0.6174 31 1 -1.8479 -5.9333 1.0263 32 1 -1.6948 -7.7077 0.5479 33 1 -0.4433 -8.1819 2.7034 34 1 -0.5958 -6.4077 3.1829 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084453380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -41.225248 kcal Electronic energy + Delta-G solvation = -15545.486198 eV Core-core repulsion = 13056.752287 eV Total energy + Delta-G solvation = -2488.733911 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22522 -38.86761 -36.87415 -35.26720 -32.67389 -32.01695 -27.98902 -26.18575 -24.65368 -23.34131 -22.91718 -21.49728 -19.64335 -18.76473 -18.24869 -17.12743 -16.66827 -16.15195 -15.64548 -15.20874 -14.69538 -14.51370 -14.19619 -13.95918 -13.57705 -13.44534 -12.90906 -12.75306 -12.60149 -12.44979 -12.16097 -11.98199 -11.59375 -11.47676 -11.44224 -11.38941 -11.30791 -10.74140 -10.51729 -9.50701 -8.22088 -6.34194 1.35776 1.39491 1.50097 1.56036 2.08497 2.39909 2.94535 3.10761 3.54710 3.76261 3.85194 3.99040 4.00695 4.09630 4.23775 4.39821 4.60066 4.71270 4.72551 4.86682 4.89144 4.99252 5.03824 5.13101 5.22054 5.23016 5.28071 5.44928 5.49073 5.65876 5.86066 6.16709 6.70181 6.82620 7.28439 7.34576 8.90685 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.007953 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.315151 B = 3519.863322 C = 4129.905018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.140 3.860 11 H 0.040 0.960 12 C -0.110 4.110 13 C -0.119 4.119 14 C 0.095 3.905 15 N -0.616 5.616 16 C 0.531 3.469 17 O -0.597 6.597 18 C -0.190 4.190 19 C -0.144 4.144 20 C -0.148 4.148 21 H 0.262 0.738 22 H -0.021 1.021 23 H -0.012 1.012 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.161 0.839 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -17.060 -4.892 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.083 0.917 9 C -0.008 4.008 10 C 0.037 3.963 11 H 0.059 0.941 12 C -0.148 4.148 13 C -0.157 4.157 14 C -0.026 4.026 15 N -0.348 5.348 16 C 0.322 3.678 17 O -0.478 6.478 18 C -0.211 4.211 19 C -0.181 4.181 20 C -0.185 4.185 21 H 0.071 0.929 22 H -0.003 1.003 23 H 0.006 0.994 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.322 -16.596 -4.351 17.475 hybrid contribution -0.059 1.591 0.396 1.640 sum 3.263 -15.005 -3.955 15.857 Atomic orbital electron populations 1.70152 1.08151 1.27692 1.51757 1.26071 0.95753 1.03698 0.94646 0.85361 0.78439 0.77870 0.78849 1.18836 1.21080 1.18723 1.21517 0.93436 0.91700 1.50470 0.91737 1.19199 0.94264 0.93159 0.94197 1.21634 0.93381 0.83079 0.98230 0.94146 1.22491 1.00701 0.98134 0.93473 1.22832 0.97034 0.93156 1.02669 1.22618 0.98762 0.97261 0.83993 1.48784 1.51327 1.19352 1.15298 1.20351 0.77459 0.89140 0.80893 1.90690 1.60811 1.57981 1.38339 1.22251 0.97232 0.93811 1.07775 1.23025 0.90007 1.03887 1.01199 1.23032 1.01170 1.03619 0.90714 0.92901 1.00307 0.99374 0.91946 0.89955 0.89336 0.86986 0.87159 0.91370 0.82186 0.91314 0.83739 0.84120 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.06 13.29 21.45 0.28 -60.78 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 46.33 29.54 68.60 2.03 48.36 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -32.18 8.66 25.60 0.22 -31.95 16 8 H 0.06 3.67 7.75 -2.91 -0.02 3.64 16 9 C 0.03 1.74 4.45 29.85 0.13 1.88 16 10 C 0.14 6.34 2.87 45.34 0.13 6.47 16 11 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 12 C -0.11 -3.81 6.03 31.78 0.19 -3.62 16 13 C -0.12 -2.70 7.08 31.98 0.23 -2.47 16 14 C 0.09 2.38 6.74 86.85 0.59 2.96 16 15 N -0.62 -23.57 3.06 -788.09 -2.42 -25.98 16 16 C 0.53 21.70 7.45 87.66 0.65 22.36 16 17 O -0.60 -31.76 15.05 -3.04 -0.05 -31.80 16 18 C -0.19 -5.06 5.50 -11.54 -0.06 -5.13 16 19 C -0.14 -3.37 10.24 30.62 0.31 -3.06 16 20 C -0.15 -3.59 10.05 30.62 0.31 -3.28 16 21 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 22 H -0.02 -1.48 6.54 -2.39 -0.02 -1.50 16 23 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 24 H 0.06 2.38 7.76 -2.39 -0.02 2.36 16 25 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.11 1.85 6.96 -2.39 -0.02 1.84 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.16 2.86 7.11 -2.39 -0.02 2.85 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.31 7.67 -2.39 -0.02 2.29 16 Total: -1.00 -82.95 282.02 4.08 -78.87 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.07 Total: 6.99 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.16 Total: -15.66 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.13 Total: -86.76 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.80 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -82.95 4.08 -78.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.647 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds