Wall clock time and date at job start Mon Mar 30 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47244 * 266.13560 * 3 2 1 5 5 H 1.48498 * 109.47125 * 26.13772 * 3 2 1 6 6 H 1.48497 * 109.46918 * 146.13616 * 3 2 1 7 7 C 1.38808 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99868 * 351.19280 * 7 2 1 9 9 N 1.36939 * 119.99986 * 171.20047 * 7 2 1 10 10 C 1.47745 * 125.82429 * 130.88434 * 9 7 2 11 11 C 1.54906 * 104.84446 * 204.24979 * 10 9 7 12 12 C 1.55159 * 101.58018 * 322.90717 * 11 10 9 13 13 C 1.47020 * 125.64806 * 310.88718 * 9 7 2 14 14 H 1.08999 * 109.88510 * 59.31762 * 13 9 7 15 15 C 1.53001 * 109.88071 * 298.31259 * 13 9 7 16 16 H 1.08999 * 109.97746 * 190.16592 * 15 13 9 17 17 C 1.54281 * 109.98386 * 68.89294 * 15 13 9 18 18 C 1.54989 * 103.75077 * 217.48927 * 17 15 13 19 19 C 1.54885 * 102.33326 * 37.08692 * 18 17 15 20 20 C 1.51456 * 110.01736 * 311.46192 * 15 13 9 21 21 O 1.20758 * 126.33707 * 299.02565 * 20 15 13 22 22 H 0.97003 * 119.99736 * 359.97438 * 1 2 3 23 23 H 1.08996 * 110.43445 * 85.36990 * 10 9 7 24 24 H 1.09000 * 110.28986 * 323.05534 * 10 9 7 25 25 H 1.08996 * 111.00866 * 204.83254 * 11 10 9 26 26 H 1.09004 * 111.03722 * 80.98958 * 11 10 9 27 27 H 1.08997 * 110.71893 * 277.14075 * 12 11 10 28 28 H 1.08993 * 110.87493 * 153.93319 * 12 11 10 29 29 H 1.08995 * 110.57045 * 336.05892 * 17 15 13 30 30 H 1.09005 * 110.57009 * 98.92562 * 17 15 13 31 31 H 1.09004 * 110.82946 * 155.30073 * 18 17 15 32 32 H 1.09003 * 110.83240 * 278.87283 * 18 17 15 33 33 H 1.09005 * 110.44294 * 203.63607 * 19 18 17 34 34 H 1.09003 * 110.54829 * 81.16500 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5794 1.9993 -1.3969 5 1 1.4092 2.6749 0.6168 6 1 3.5045 1.4651 0.7801 7 6 2.0102 -1.2021 -0.0005 8 1 1.4797 -2.1319 0.1422 9 7 3.3675 -1.2091 -0.1820 10 6 4.3486 -1.9264 0.6581 11 6 5.6776 -1.1549 0.4628 12 6 5.5981 -0.7728 -1.0389 13 6 4.0931 -0.5024 -1.2475 14 1 3.8964 0.5678 -1.1833 15 6 3.6542 -1.0306 -2.6147 16 1 4.3119 -0.6427 -3.3925 17 6 2.1969 -0.6113 -2.8989 18 6 1.5957 -1.8394 -3.6286 19 6 2.2693 -3.0240 -2.8923 20 6 3.6840 -2.5449 -2.6194 21 8 4.6534 -3.2420 -2.4391 22 1 -0.4850 0.8401 0.0004 23 1 4.4556 -2.9576 0.3219 24 1 4.0433 -1.8974 1.7041 25 1 6.5353 -1.7987 0.6573 26 1 5.7093 -0.2648 1.0912 27 1 5.9317 -1.6000 -1.6654 28 1 6.1830 0.1240 -1.2430 29 1 1.6645 -0.4209 -1.9671 30 1 2.1700 0.2678 -3.5429 31 1 0.5131 -1.8716 -3.5057 32 1 1.8671 -1.8343 -4.6842 33 1 2.2832 -3.9092 -3.5283 34 1 1.7522 -3.2367 -1.9566 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086493861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:45 Heat of formation + Delta-G solvation = -20.069068 kcal Electronic energy + Delta-G solvation = -16794.504009 eV Core-core repulsion = 14306.687500 eV Total energy + Delta-G solvation = -2487.816510 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68027 -37.10391 -35.15203 -32.71503 -30.06118 -29.95511 -26.53388 -25.48552 -24.03376 -20.73302 -20.28199 -19.85325 -18.42423 -16.60884 -16.24675 -15.10905 -15.02490 -14.43742 -13.72578 -13.48246 -12.93547 -12.78900 -12.53968 -12.31857 -11.95578 -11.80447 -11.54474 -11.16713 -10.93808 -10.81104 -10.47493 -10.41032 -10.27445 -10.05209 -9.75582 -9.69414 -9.64981 -8.57734 -8.35923 -6.64324 -6.09878 -3.66994 2.72404 3.26082 3.39172 3.46146 4.40954 4.87514 4.98069 5.13274 5.25911 5.49017 5.54111 5.62085 5.68752 5.71609 5.95709 6.06122 6.12264 6.20886 6.27312 6.33201 6.40260 6.49443 6.54732 6.64924 6.69113 6.76041 6.80306 6.92263 6.99711 7.52668 7.99348 8.26305 8.30062 8.78424 9.52180 10.24293 11.02392 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.017867 C = 0.012935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.889599 B = 1566.773414 C = 2164.128736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.047 3.953 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.127 3.873 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.158 3.842 14 H 0.042 0.958 15 C -0.153 4.153 16 H 0.079 0.921 17 C -0.146 4.146 18 C -0.109 4.109 19 C -0.173 4.173 20 C 0.403 3.597 21 O -0.468 6.468 22 H 0.267 0.733 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -0.808 -4.790 7.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.155 4.155 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.002 3.998 11 C -0.172 4.172 12 C -0.175 4.175 13 C 0.052 3.948 14 H 0.059 0.941 15 C -0.174 4.174 16 H 0.097 0.903 17 C -0.182 4.182 18 C -0.147 4.147 19 C -0.210 4.210 20 C 0.280 3.720 21 O -0.343 6.343 22 H 0.077 0.923 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.269 -1.077 -4.662 7.886 hybrid contribution 0.305 1.151 -0.120 1.197 sum 6.574 0.073 -4.782 8.130 Atomic orbital electron populations 1.69770 1.05731 1.27085 1.51335 1.25669 0.95174 0.98131 0.96564 0.86875 0.79952 0.83686 0.78235 1.20410 1.22893 1.19285 1.18368 0.79168 0.93110 1.46751 0.90410 1.44764 1.02548 1.58830 1.27137 1.21856 0.88226 0.94571 0.95119 1.22700 0.98292 1.00072 0.96097 1.22730 0.96035 1.01320 0.97428 1.21103 0.90731 0.95658 0.87265 0.94106 1.22699 0.99286 0.95559 0.99841 0.90340 1.23047 0.94668 0.95923 1.04578 1.22237 1.00431 0.94797 0.97209 1.22796 0.96508 0.98707 1.03028 1.24670 0.89044 0.91182 0.67136 1.90266 1.40445 1.64585 1.39011 0.92340 0.95452 0.93396 0.91986 0.92026 0.90006 0.92262 0.84415 0.93303 0.90833 0.92869 0.91056 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 13.97 55.49 0.78 -24.48 16 2 C 0.05 1.24 3.55 -17.43 -0.06 1.18 16 3 Si 0.88 21.54 24.18 -169.99 -4.11 17.43 16 4 H -0.28 -6.51 6.85 56.52 0.39 -6.12 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.38 8.48 -15.06 -0.13 -6.50 16 8 H 0.08 2.21 8.01 -52.49 -0.42 1.79 16 9 N -0.61 -14.08 1.76 -162.32 -0.29 -14.37 16 10 C 0.13 2.66 7.25 -2.35 -0.02 2.64 16 11 C -0.13 -2.42 7.09 -24.58 -0.17 -2.59 16 12 C -0.14 -2.55 6.28 -24.90 -0.16 -2.70 16 13 C 0.16 3.37 2.08 -66.95 -0.14 3.23 16 14 H 0.04 0.94 3.91 -51.93 -0.20 0.73 16 15 C -0.15 -3.02 2.62 -90.73 -0.24 -3.25 16 16 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.15 -2.93 5.81 -25.01 -0.15 -3.08 16 18 C -0.11 -1.90 6.95 -24.69 -0.17 -2.07 16 19 C -0.17 -3.15 6.72 -26.33 -0.18 -3.33 16 20 C 0.40 8.02 6.36 -28.10 -0.18 7.84 16 21 O -0.47 -10.02 16.17 6.00 0.10 -9.92 16 22 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.54 6.01 -51.93 -0.31 1.22 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.14 3.25 2.76 -51.93 -0.14 3.11 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 2.28 7.80 -51.93 -0.41 1.88 16 LS Contribution 258.56 15.07 3.90 3.90 Total: -1.00 -27.87 258.56 -6.07 -33.94 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.86 Total: 2.14 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.59 Total: -8.64 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.49 Total: -38.85 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.10 Total: -9.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.11 Total: 17.43 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.87 -6.07 -33.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086493861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.876 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds