Wall clock time and date at job start Mon Mar 30 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47244 * 266.13560 * 3 2 1 5 5 H 1.48498 * 109.47125 * 26.13772 * 3 2 1 6 6 H 1.48497 * 109.46918 * 146.13616 * 3 2 1 7 7 C 1.38808 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99868 * 351.19280 * 7 2 1 9 9 N 1.36939 * 119.99986 * 171.20047 * 7 2 1 10 10 C 1.47745 * 125.82429 * 130.88434 * 9 7 2 11 11 C 1.54906 * 104.84446 * 204.24979 * 10 9 7 12 12 C 1.55159 * 101.58018 * 322.90717 * 11 10 9 13 13 C 1.47020 * 125.64806 * 310.88718 * 9 7 2 14 14 H 1.08999 * 109.88510 * 59.31762 * 13 9 7 15 15 C 1.53001 * 109.88071 * 298.31259 * 13 9 7 16 16 H 1.08999 * 109.97746 * 190.16592 * 15 13 9 17 17 C 1.54281 * 109.98386 * 68.89294 * 15 13 9 18 18 C 1.54989 * 103.75077 * 217.48927 * 17 15 13 19 19 C 1.54885 * 102.33326 * 37.08692 * 18 17 15 20 20 C 1.51456 * 110.01736 * 311.46192 * 15 13 9 21 21 O 1.20758 * 126.33707 * 299.02565 * 20 15 13 22 22 H 0.97003 * 119.99736 * 359.97438 * 1 2 3 23 23 H 1.08996 * 110.43445 * 85.36990 * 10 9 7 24 24 H 1.09000 * 110.28986 * 323.05534 * 10 9 7 25 25 H 1.08996 * 111.00866 * 204.83254 * 11 10 9 26 26 H 1.09004 * 111.03722 * 80.98958 * 11 10 9 27 27 H 1.08997 * 110.71893 * 277.14075 * 12 11 10 28 28 H 1.08993 * 110.87493 * 153.93319 * 12 11 10 29 29 H 1.08995 * 110.57045 * 336.05892 * 17 15 13 30 30 H 1.09005 * 110.57009 * 98.92562 * 17 15 13 31 31 H 1.09004 * 110.82946 * 155.30073 * 18 17 15 32 32 H 1.09003 * 110.83240 * 278.87283 * 18 17 15 33 33 H 1.09005 * 110.44294 * 203.63607 * 19 18 17 34 34 H 1.09003 * 110.54829 * 81.16500 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5794 1.9993 -1.3969 5 1 1.4092 2.6749 0.6168 6 1 3.5045 1.4651 0.7801 7 6 2.0102 -1.2021 -0.0005 8 1 1.4797 -2.1319 0.1422 9 7 3.3675 -1.2091 -0.1820 10 6 4.3486 -1.9264 0.6581 11 6 5.6776 -1.1549 0.4628 12 6 5.5981 -0.7728 -1.0389 13 6 4.0931 -0.5024 -1.2475 14 1 3.8964 0.5678 -1.1833 15 6 3.6542 -1.0306 -2.6147 16 1 4.3119 -0.6427 -3.3925 17 6 2.1969 -0.6113 -2.8989 18 6 1.5957 -1.8394 -3.6286 19 6 2.2693 -3.0240 -2.8923 20 6 3.6840 -2.5449 -2.6194 21 8 4.6534 -3.2420 -2.4391 22 1 -0.4850 0.8401 0.0004 23 1 4.4556 -2.9576 0.3219 24 1 4.0433 -1.8974 1.7041 25 1 6.5353 -1.7987 0.6573 26 1 5.7093 -0.2648 1.0912 27 1 5.9317 -1.6000 -1.6654 28 1 6.1830 0.1240 -1.2430 29 1 1.6645 -0.4209 -1.9671 30 1 2.1700 0.2678 -3.5429 31 1 0.5131 -1.8716 -3.5057 32 1 1.8671 -1.8343 -4.6842 33 1 2.2832 -3.9092 -3.5283 34 1 1.7522 -3.2367 -1.9566 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086493861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:45 Heat of formation + Delta-G solvation = -36.111533 kcal Electronic energy + Delta-G solvation = -16795.199663 eV Core-core repulsion = 14306.687500 eV Total energy + Delta-G solvation = -2488.512163 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27585 -38.75434 -36.68765 -34.67508 -31.77889 -31.60242 -28.07822 -27.10920 -25.84492 -22.30118 -22.00694 -21.35997 -20.11204 -18.42806 -17.89139 -16.95185 -16.56726 -15.97905 -15.39098 -15.32036 -14.75675 -14.32769 -14.16154 -13.86485 -13.60286 -13.45489 -13.26362 -12.92528 -12.58624 -12.50562 -12.13069 -11.89042 -11.86285 -11.77511 -11.49972 -11.36963 -11.20252 -10.37355 -10.09337 -8.54267 -8.15599 -5.71189 1.14815 1.32244 1.41223 1.51085 2.40953 3.08536 3.31038 3.38527 3.73706 3.94434 3.98465 4.13298 4.20650 4.28671 4.43932 4.49199 4.61346 4.67181 4.81605 4.84964 4.95967 5.00228 5.09558 5.11007 5.17377 5.22017 5.28076 5.33780 5.48141 5.84790 6.04531 6.24117 6.69348 6.87166 7.50666 8.28093 8.99787 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.017867 C = 0.012935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.889599 B = 1566.773414 C = 2164.128736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.014 3.986 3 Si 0.929 3.071 4 H -0.261 1.261 5 H -0.310 1.310 6 H -0.268 1.268 7 C -0.230 4.230 8 H 0.040 0.960 9 N -0.617 5.617 10 C 0.120 3.880 11 C -0.124 4.124 12 C -0.131 4.131 13 C 0.148 3.852 14 H 0.031 0.969 15 C -0.153 4.153 16 H 0.107 0.893 17 C -0.155 4.155 18 C -0.100 4.100 19 C -0.171 4.171 20 C 0.401 3.599 21 O -0.484 6.484 22 H 0.265 0.735 23 H 0.020 0.980 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 -0.246 -6.048 10.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.239 1.239 6 H -0.193 1.193 7 C -0.359 4.359 8 H 0.058 0.942 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.162 4.162 12 C -0.169 4.169 13 C 0.043 3.957 14 H 0.048 0.952 15 C -0.173 4.173 16 H 0.124 0.876 17 C -0.192 4.192 18 C -0.138 4.138 19 C -0.209 4.209 20 C 0.280 3.720 21 O -0.360 6.360 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.247 -0.522 -5.928 10.170 hybrid contribution -0.310 0.885 0.281 0.979 sum 7.937 0.363 -5.648 9.748 Atomic orbital electron populations 1.69869 1.07078 1.27511 1.53544 1.26003 0.95405 1.00311 0.96703 0.86133 0.78609 0.80570 0.78884 1.18692 1.23892 1.19256 1.18022 0.80547 0.91649 1.45673 0.94235 1.44840 1.01906 1.59053 1.28645 1.21927 0.89575 0.94511 0.94374 1.22667 0.97272 1.00196 0.96041 1.22736 0.94138 1.02601 0.97428 1.21258 0.92419 0.94719 0.87312 0.95171 1.22701 0.99475 0.95349 0.99816 0.87568 1.22991 0.94865 0.97706 1.03633 1.22222 0.99891 0.92955 0.98697 1.22757 0.95398 1.00301 1.02401 1.24851 0.89274 0.91412 0.66498 1.90258 1.41026 1.64935 1.39766 0.92519 0.96241 0.94083 0.89148 0.91673 0.90035 0.89481 0.87847 0.91876 0.91403 0.89461 0.88500 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.98 13.97 21.65 0.30 -53.67 16 2 C 0.01 0.77 3.55 84.86 0.30 1.07 16 3 Si 0.93 44.03 24.18 68.60 1.66 45.69 16 4 H -0.26 -11.57 6.85 99.48 0.68 -10.88 16 5 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.23 -12.16 8.48 84.03 0.71 -11.45 16 8 H 0.04 2.38 8.01 -2.91 -0.02 2.35 16 9 N -0.62 -28.34 1.76 -667.47 -1.17 -29.52 16 10 C 0.12 4.94 7.25 86.79 0.63 5.57 16 11 C -0.12 -4.11 7.09 31.99 0.23 -3.89 16 12 C -0.13 -4.41 6.28 31.78 0.20 -4.21 16 13 C 0.15 5.98 2.08 45.34 0.09 6.07 16 14 H 0.03 1.31 3.91 -2.39 -0.01 1.30 16 15 C -0.15 -5.65 2.62 -10.86 -0.03 -5.68 16 16 H 0.11 3.34 8.14 -2.39 -0.02 3.33 16 17 C -0.15 -5.98 5.81 31.71 0.18 -5.79 16 18 C -0.10 -3.30 6.95 31.92 0.22 -3.08 16 19 C -0.17 -6.04 6.72 30.86 0.21 -5.83 16 20 C 0.40 15.25 6.36 29.71 0.19 15.44 16 21 O -0.48 -19.77 16.17 -1.45 -0.02 -19.79 16 22 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.08 2.78 6.01 -2.39 -0.01 2.76 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.10 4.84 2.76 -2.39 -0.01 4.84 16 30 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 34 H 0.09 3.54 7.80 -2.39 -0.02 3.52 16 Total: -1.00 -59.74 258.56 4.76 -54.98 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.06 Total: 14.08 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 2.94 Total: -11.77 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -0.87 Total: -83.19 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.02 Total: -19.79 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.66 Total: 45.69 kcal Total: -59.74 4.76 -54.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086493861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.870 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds