Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48505 * 109.46922 * 269.99795 * 3 2 1 5 5 H 1.48492 * 109.47414 * 30.00081 * 3 2 1 6 6 H 1.48502 * 109.46803 * 150.00453 * 3 2 1 7 7 C 1.37875 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00057 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99824 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47089 * 174.45890 * 9 7 2 11 11 C 1.46897 * 111.00314 * 286.44369 * 10 9 7 12 12 C 1.53001 * 117.49874 * 142.14000 * 11 10 9 13 13 C 1.53005 * 117.49931 * 73.47950 * 11 10 9 14 14 C 1.46894 * 111.00018 * 162.48666 * 10 9 7 15 15 H 1.09005 * 110.73953 * 61.97720 * 14 10 9 16 16 C 1.54984 * 110.83593 * 298.32548 * 14 10 9 17 17 C 1.54278 * 103.75248 * 204.70707 * 16 14 10 18 18 C 1.51445 * 106.84994 * 23.11832 * 17 16 14 19 19 O 1.20764 * 126.33848 * 180.38066 * 18 17 16 20 20 C 1.51839 * 107.31759 * 0.36103 * 18 17 16 21 21 H 0.97005 * 119.99492 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46784 * 54.46419 * 9 7 2 23 23 H 1.08993 * 109.47181 * 294.46537 * 9 7 2 24 24 H 1.09002 * 115.55333 * 287.81611 * 11 10 9 25 25 H 1.08999 * 117.49970 * 0.02562 * 12 11 10 26 26 H 1.09001 * 117.49456 * 145.02245 * 12 11 10 27 27 H 1.08994 * 117.50150 * 214.97785 * 13 11 10 28 28 H 1.09003 * 117.49759 * 359.97438 * 13 11 10 29 29 H 1.09005 * 110.56848 * 323.26913 * 16 14 10 30 30 H 1.09000 * 110.56965 * 86.13378 * 16 14 10 31 31 H 1.09006 * 109.98067 * 263.77193 * 17 16 14 32 32 H 1.08994 * 109.98909 * 142.47335 * 17 16 14 33 33 H 1.09001 * 110.43896 * 217.46741 * 20 18 17 34 34 H 1.09005 * 110.54579 * 95.00494 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5726 0.1344 11 6 3.8112 -3.0675 1.5044 12 6 3.4023 -4.5319 1.6762 13 6 2.3862 -3.4173 1.9379 14 6 5.4095 -2.6729 -0.2710 15 1 6.0405 -2.0571 0.3700 16 6 5.5833 -2.2832 -1.7609 17 6 6.8724 -3.0177 -2.1841 18 6 7.0493 -4.1796 -1.2290 19 8 7.9512 -4.9827 -1.2384 20 6 5.8831 -4.1475 -0.2573 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.5963 0.8357 23 1 3.8745 -0.7692 -0.9358 24 1 4.4747 -2.6388 2.2554 25 1 3.2747 -5.1281 0.7727 26 1 3.7967 -5.0664 2.5404 27 1 2.1124 -3.2192 2.9741 28 1 1.5896 -3.2798 1.2067 29 1 4.7340 -2.6306 -2.3493 30 1 5.7057 -1.2049 -1.8630 31 1 7.7259 -2.3434 -2.1126 32 1 6.7731 -3.3863 -3.2050 33 1 6.2123 -4.4324 0.7420 34 1 5.0843 -4.8071 -0.5964 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086618136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -6.068157 kcal Electronic energy + Delta-G solvation = -15618.892169 eV Core-core repulsion = 13131.682785 eV Total energy + Delta-G solvation = -2487.209385 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71350 -37.91657 -35.52901 -33.18209 -31.85371 -29.06865 -27.15706 -25.36191 -21.97920 -21.64687 -20.65379 -19.43114 -19.13228 -16.93070 -16.13178 -15.76401 -15.17386 -14.58166 -14.23878 -14.17811 -13.60808 -13.32555 -12.91005 -12.74679 -12.11474 -11.98870 -11.52424 -11.35005 -10.96484 -10.84808 -10.78131 -10.53976 -10.34496 -10.00247 -9.69583 -9.39949 -9.24142 -9.10298 -8.55699 -7.51422 -6.05664 -4.01945 1.98517 3.25286 3.33558 3.34534 4.15950 4.39746 4.47498 4.58441 4.69080 4.95385 5.19982 5.25445 5.39760 5.48366 5.60076 5.63165 5.71824 5.78013 5.94298 6.03628 6.05351 6.16132 6.25186 6.30779 6.47179 6.69138 6.77336 6.91403 7.09157 7.52977 7.60976 7.83392 8.02001 8.64369 9.04523 9.55944 11.06810 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.008843 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.771816 B = 3165.656549 C = 3851.448938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.869 3.131 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.502 4.502 8 H 0.088 0.912 9 C 0.161 3.839 10 N -0.492 5.492 11 C 0.019 3.981 12 C -0.185 4.185 13 C -0.146 4.146 14 C 0.084 3.916 15 H 0.044 0.956 16 C -0.112 4.112 17 C -0.182 4.182 18 C 0.372 3.628 19 O -0.460 6.460 20 C -0.170 4.170 21 H 0.263 0.737 22 H -0.008 1.008 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 -4.820 -0.349 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.540 4.540 8 H 0.106 0.894 9 C 0.035 3.965 10 N -0.216 5.216 11 C -0.090 4.090 12 C -0.223 4.223 13 C -0.183 4.183 14 C -0.025 4.025 15 H 0.062 0.938 16 C -0.149 4.149 17 C -0.220 4.220 18 C 0.248 3.752 19 O -0.334 6.334 20 C -0.208 4.208 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.322 -5.393 -0.669 11.665 hybrid contribution 0.795 1.695 0.590 1.963 sum 11.117 -3.698 -0.078 11.716 Atomic orbital electron populations 1.69886 1.06018 1.26701 1.51417 1.24884 0.94690 0.98606 0.95137 0.86961 0.80375 0.84488 0.78508 1.20257 1.21301 1.19349 1.21121 0.88581 0.94703 1.49598 0.89448 1.20229 0.97320 0.83569 0.95358 1.61844 1.13873 1.25288 1.20615 1.22039 0.99605 0.96802 0.90517 1.23059 1.05719 0.91410 1.02086 1.23118 0.93625 0.99773 1.01777 1.22389 0.90817 0.93600 0.95743 0.93829 1.22376 0.96426 1.00174 0.95960 1.22692 1.00452 0.98057 1.00839 1.25066 0.83746 0.82500 0.83912 1.90385 1.33914 1.39110 1.69993 1.22918 0.98200 0.99466 1.00189 0.92744 0.99046 0.95516 0.91346 0.88942 0.90159 0.90078 0.86160 0.89192 0.90825 0.88802 0.88462 0.89570 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 20.74 27.58 -169.99 -4.69 16.05 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.20 6.38 56.52 0.36 -5.84 16 7 C -0.50 -13.32 8.58 -34.44 -0.30 -13.62 16 8 H 0.09 2.50 5.74 -52.48 -0.30 2.20 16 9 C 0.16 3.62 3.73 -4.98 -0.02 3.61 16 10 N -0.49 -9.36 4.47 -217.73 -0.97 -10.33 16 11 C 0.02 0.35 4.41 -67.71 -0.30 0.05 16 12 C -0.18 -2.87 9.62 -26.69 -0.26 -3.13 16 13 C -0.15 -2.70 9.39 -26.69 -0.25 -2.95 16 14 C 0.08 1.29 2.61 -65.67 -0.17 1.12 16 15 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 16 C -0.11 -1.54 5.30 -25.01 -0.13 -1.67 16 17 C -0.18 -2.11 6.69 -26.85 -0.18 -2.29 16 18 C 0.37 5.05 7.88 -28.11 -0.22 4.83 16 19 O -0.46 -7.51 17.99 6.00 0.11 -7.41 16 20 C -0.17 -2.31 5.01 -26.33 -0.13 -2.44 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H -0.01 -0.19 6.70 -51.93 -0.35 -0.54 16 23 H 0.03 0.59 6.13 -51.93 -0.32 0.27 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.12 2.62 5.63 -51.93 -0.29 2.33 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.00 7.63 -51.93 -0.40 0.61 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.11 1.57 7.65 -51.93 -0.40 1.18 16 LS Contribution 273.98 15.07 4.13 4.13 Total: -1.00 -29.34 273.98 -7.72 -37.06 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.01 Total: 1.05 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.05 Total: -14.70 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.20 Total: -36.18 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.69 Total: 16.05 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.34 -7.72 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086618136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.990 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds