Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48505 * 109.46922 * 269.99795 * 3 2 1 5 5 H 1.48492 * 109.47414 * 30.00081 * 3 2 1 6 6 H 1.48502 * 109.46803 * 150.00453 * 3 2 1 7 7 C 1.37875 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00057 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99824 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47089 * 174.45890 * 9 7 2 11 11 C 1.46897 * 111.00314 * 286.44369 * 10 9 7 12 12 C 1.53001 * 117.49874 * 142.14000 * 11 10 9 13 13 C 1.53005 * 117.49931 * 73.47950 * 11 10 9 14 14 C 1.46894 * 111.00018 * 162.48666 * 10 9 7 15 15 H 1.09005 * 110.73953 * 61.97720 * 14 10 9 16 16 C 1.54984 * 110.83593 * 298.32548 * 14 10 9 17 17 C 1.54278 * 103.75248 * 204.70707 * 16 14 10 18 18 C 1.51445 * 106.84994 * 23.11832 * 17 16 14 19 19 O 1.20764 * 126.33848 * 180.38066 * 18 17 16 20 20 C 1.51839 * 107.31759 * 0.36103 * 18 17 16 21 21 H 0.97005 * 119.99492 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46784 * 54.46419 * 9 7 2 23 23 H 1.08993 * 109.47181 * 294.46537 * 9 7 2 24 24 H 1.09002 * 115.55333 * 287.81611 * 11 10 9 25 25 H 1.08999 * 117.49970 * 0.02562 * 12 11 10 26 26 H 1.09001 * 117.49456 * 145.02245 * 12 11 10 27 27 H 1.08994 * 117.50150 * 214.97785 * 13 11 10 28 28 H 1.09003 * 117.49759 * 359.97438 * 13 11 10 29 29 H 1.09005 * 110.56848 * 323.26913 * 16 14 10 30 30 H 1.09000 * 110.56965 * 86.13378 * 16 14 10 31 31 H 1.09006 * 109.98067 * 263.77193 * 17 16 14 32 32 H 1.08994 * 109.98909 * 142.47335 * 17 16 14 33 33 H 1.09001 * 110.43896 * 217.46741 * 20 18 17 34 34 H 1.09005 * 110.54579 * 95.00494 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5726 0.1344 11 6 3.8112 -3.0675 1.5044 12 6 3.4023 -4.5319 1.6762 13 6 2.3862 -3.4173 1.9379 14 6 5.4095 -2.6729 -0.2710 15 1 6.0405 -2.0571 0.3700 16 6 5.5833 -2.2832 -1.7609 17 6 6.8724 -3.0177 -2.1841 18 6 7.0493 -4.1796 -1.2290 19 8 7.9512 -4.9827 -1.2384 20 6 5.8831 -4.1475 -0.2573 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.5963 0.8357 23 1 3.8745 -0.7692 -0.9358 24 1 4.4747 -2.6388 2.2554 25 1 3.2747 -5.1281 0.7727 26 1 3.7967 -5.0664 2.5404 27 1 2.1124 -3.2192 2.9741 28 1 1.5896 -3.2798 1.2067 29 1 4.7340 -2.6306 -2.3493 30 1 5.7057 -1.2049 -1.8630 31 1 7.7259 -2.3434 -2.1126 32 1 6.7731 -3.3863 -3.2050 33 1 6.2123 -4.4324 0.7420 34 1 5.0843 -4.8071 -0.5964 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086618136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -24.882206 kcal Electronic energy + Delta-G solvation = -15619.708008 eV Core-core repulsion = 13131.682785 eV Total energy + Delta-G solvation = -2488.025223 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88263 -39.28263 -36.76965 -35.02729 -33.54356 -30.39718 -28.73882 -26.59070 -23.80280 -23.04061 -21.93458 -20.85308 -20.24326 -18.86234 -17.28840 -17.06509 -16.69469 -15.93141 -15.82434 -15.50554 -15.13830 -14.54920 -14.46669 -14.12176 -13.76407 -13.59426 -12.86295 -12.64262 -12.42146 -12.39789 -12.15962 -11.89459 -11.80766 -11.67337 -11.28178 -10.98558 -10.70045 -10.62258 -10.47572 -9.02695 -8.18021 -6.18215 0.92082 1.37063 1.39267 1.47640 2.39876 2.91553 3.10180 3.15577 3.39070 3.56365 3.84919 4.15772 4.21876 4.27330 4.35702 4.38004 4.48204 4.62103 4.78503 4.82708 4.88410 4.92128 5.01246 5.03173 5.14870 5.22041 5.30004 5.38253 5.53590 5.67275 6.07496 6.47427 6.49278 6.73437 6.90793 7.43559 8.97531 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.008843 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.771816 B = 3165.656549 C = 3851.448938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.170 3.830 10 N -0.504 5.504 11 C 0.007 3.993 12 C -0.146 4.146 13 C -0.171 4.171 14 C 0.079 3.921 15 H 0.050 0.950 16 C -0.111 4.111 17 C -0.169 4.169 18 C 0.380 3.620 19 O -0.488 6.488 20 C -0.162 4.162 21 H 0.262 0.738 22 H -0.015 1.015 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.802 -4.766 -0.475 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.176 1.176 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.044 3.956 10 N -0.228 5.228 11 C -0.101 4.101 12 C -0.184 4.184 13 C -0.208 4.208 14 C -0.030 4.030 15 H 0.068 0.932 16 C -0.149 4.149 17 C -0.207 4.207 18 C 0.258 3.742 19 O -0.364 6.364 20 C -0.200 4.200 21 H 0.071 0.929 22 H 0.003 0.997 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.859 -5.355 -0.799 13.952 hybrid contribution -0.038 1.575 0.645 1.702 sum 12.820 -3.780 -0.154 13.367 Atomic orbital electron populations 1.70049 1.07955 1.27550 1.53710 1.25727 0.95408 1.02550 0.95224 0.85908 0.79443 0.79661 0.79077 1.19094 1.21636 1.17631 1.21405 0.90946 0.93394 1.47850 0.92832 1.19979 0.94499 0.85786 0.95364 1.61726 1.16547 1.22992 1.21506 1.22190 0.98816 0.98855 0.90285 1.23083 1.02144 0.90053 1.03111 1.22949 0.93313 1.03440 1.01084 1.22504 0.88586 0.95099 0.96817 0.93213 1.22356 0.97182 1.00727 0.94598 1.22616 0.99811 0.97179 1.01070 1.25152 0.82836 0.82403 0.83826 1.90392 1.34863 1.40337 1.70798 1.22833 0.98236 0.98068 1.00868 0.92889 0.99699 0.94532 0.90436 0.88815 0.86926 0.89359 0.90247 0.90463 0.90413 0.86735 0.86628 0.88844 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 13.96 21.45 0.30 -57.74 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.93 42.65 27.58 68.60 1.89 44.54 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.25 -10.75 6.38 99.48 0.64 -10.12 16 7 C -0.50 -26.99 8.58 25.60 0.22 -26.77 16 8 H 0.05 3.23 5.74 -2.91 -0.02 3.21 16 9 C 0.17 7.53 3.73 85.56 0.32 7.85 16 10 N -0.50 -18.60 4.47 -842.75 -3.77 -22.37 16 11 C 0.01 0.26 4.41 44.92 0.20 0.45 16 12 C -0.15 -4.26 9.62 30.62 0.29 -3.96 16 13 C -0.17 -6.39 9.39 30.62 0.29 -6.10 16 14 C 0.08 2.24 2.61 46.24 0.12 2.36 16 15 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 16 C -0.11 -2.76 5.30 31.71 0.17 -2.59 16 17 C -0.17 -3.32 6.69 30.52 0.20 -3.11 16 18 C 0.38 9.24 7.88 29.70 0.23 9.47 16 19 O -0.49 -14.76 17.99 -1.46 -0.03 -14.79 16 20 C -0.16 -3.99 5.01 30.86 0.15 -3.83 16 21 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 22 H -0.01 -0.67 6.70 -2.39 -0.02 -0.69 16 23 H 0.04 1.55 6.13 -2.39 -0.01 1.54 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.09 2.72 7.76 -2.39 -0.02 2.70 16 26 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.08 3.66 5.63 -2.39 -0.01 3.65 16 29 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.08 1.88 7.63 -2.39 -0.02 1.87 16 31 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.11 2.86 7.65 -2.38 -0.02 2.84 16 Total: -1.00 -64.34 273.98 2.07 -62.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.01 Total: 13.45 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 2.66 Total: -25.36 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -3.47 Total: -80.11 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.03 Total: -14.79 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.89 Total: 44.54 kcal Total: -64.34 2.07 -62.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086618136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.385 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds