Wall clock time and date at job start Mon Mar 30 2020 03:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48494 * 109.46690 * 90.00290 * 3 2 1 5 5 H 1.48497 * 109.47090 * 210.00352 * 3 2 1 6 6 H 1.48503 * 109.47027 * 330.00211 * 3 2 1 7 7 C 1.37873 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00578 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47248 * 183.37007 * 9 7 2 11 11 C 1.46901 * 110.99700 * 163.48706 * 10 9 7 12 12 C 1.52992 * 117.50090 * 8.33050 * 11 10 9 13 13 C 1.53002 * 60.00465 * 252.51114 * 12 11 10 14 14 C 1.46899 * 111.00338 * 287.44019 * 10 9 7 15 15 H 1.08996 * 110.51124 * 307.35996 * 14 10 9 16 16 C 1.54984 * 110.56757 * 70.27575 * 14 10 9 17 17 C 1.54890 * 102.33408 * 155.65238 * 16 14 10 18 18 C 1.51847 * 104.42857 * 322.37212 * 17 16 14 19 19 O 1.20758 * 126.33623 * 203.76593 * 18 17 16 20 20 C 1.51449 * 107.31940 * 23.79168 * 18 17 16 21 21 H 0.96999 * 119.99383 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47267 * 303.38119 * 9 7 2 23 23 H 1.09007 * 109.46700 * 63.37595 * 9 7 2 24 24 H 1.08996 * 115.54800 * 154.04685 * 11 10 9 25 25 H 1.09006 * 117.50133 * 0.02562 * 12 11 10 26 26 H 1.09003 * 117.50065 * 145.02373 * 12 11 10 27 27 H 1.08998 * 117.49951 * 252.51369 * 13 12 11 28 28 H 1.09000 * 117.49531 * 107.48504 * 13 12 11 29 29 H 1.09006 * 110.83168 * 273.86315 * 16 14 10 30 30 H 1.09001 * 110.83777 * 37.43896 * 16 14 10 31 31 H 1.09000 * 110.44090 * 203.63467 * 17 16 14 32 32 H 1.08998 * 110.54763 * 81.16468 * 17 16 14 33 33 H 1.08997 * 109.98064 * 240.29173 * 20 18 17 34 34 H 1.09003 * 110.01420 * 119.00646 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2037 -3.6145 0.0803 11 6 1.5266 -4.8577 0.4728 12 6 -0.0021 -4.8415 0.5309 13 6 0.8122 -4.8762 1.8257 14 6 2.9235 -3.7852 -1.1889 15 1 2.2211 -3.8638 -2.0187 16 6 3.9113 -2.6129 -1.4166 17 6 4.9607 -3.2440 -2.3651 18 6 5.1104 -4.6709 -1.8679 19 8 6.0681 -5.3884 -2.0301 20 6 3.8360 -5.0278 -1.1316 21 1 -0.4849 -0.8401 0.0004 22 1 0.5802 -2.5314 0.8578 23 1 0.6703 -2.5833 -0.9191 24 1 2.0085 -5.7789 0.1455 25 1 -0.5056 -3.9085 0.2774 26 1 -0.5265 -5.7522 0.2416 27 1 0.8237 -5.8098 2.3882 28 1 0.8446 -3.9659 2.4244 29 1 3.4109 -1.7719 -1.8967 30 1 4.3722 -2.3063 -0.4776 31 1 5.9097 -2.7131 -2.2899 32 1 4.6009 -3.2350 -3.3939 33 1 4.0621 -5.2766 -0.0947 34 1 3.3474 -5.8716 -1.6189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086618137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:59 Heat of formation + Delta-G solvation = -25.884098 kcal Electronic energy + Delta-G solvation = -15759.495293 eV Core-core repulsion = 13271.426625 eV Total energy + Delta-G solvation = -2488.068668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02306 -39.63459 -36.96637 -35.32527 -33.10048 -30.31520 -27.76436 -26.88114 -24.67863 -23.22204 -22.02368 -21.00155 -19.94196 -19.02505 -17.41600 -17.21790 -16.80630 -15.85637 -15.65841 -15.54522 -14.94535 -14.73112 -14.26182 -14.24647 -13.54277 -13.16355 -12.86107 -12.61796 -12.58813 -12.36568 -12.25492 -12.02941 -11.91511 -11.73089 -11.38674 -11.14751 -10.57740 -10.54566 -10.41115 -8.93412 -8.54850 -6.25927 0.90120 1.56994 1.64544 1.81122 2.59200 2.76932 3.12746 3.24508 3.34054 3.51469 3.82554 4.00734 4.05331 4.14161 4.24851 4.36262 4.39365 4.53449 4.69315 4.72993 4.77486 4.85442 4.94563 5.00260 5.05293 5.13734 5.24606 5.34655 5.44762 5.90806 6.09168 6.43776 6.48364 6.54157 6.70554 7.52764 8.81337 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.010952 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.682972 B = 2556.041478 C = 3698.909147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.040 4.040 3 Si 1.113 2.887 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.290 1.290 7 C -0.591 4.591 8 H 0.079 0.921 9 C 0.197 3.803 10 N -0.502 5.502 11 C 0.012 3.988 12 C -0.225 4.225 13 C -0.168 4.168 14 C 0.093 3.907 15 H 0.041 0.959 16 C -0.094 4.094 17 C -0.177 4.177 18 C 0.384 3.616 19 O -0.486 6.486 20 C -0.170 4.170 21 H 0.251 0.749 22 H 0.003 0.997 23 H -0.042 1.042 24 H 0.142 0.858 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 -8.855 -2.562 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.237 4.237 3 Si 0.936 3.064 4 H -0.207 1.207 5 H -0.185 1.185 6 H -0.216 1.216 7 C -0.629 4.629 8 H 0.097 0.903 9 C 0.071 3.929 10 N -0.224 5.224 11 C -0.098 4.098 12 C -0.264 4.264 13 C -0.206 4.206 14 C -0.015 4.015 15 H 0.059 0.941 16 C -0.132 4.132 17 C -0.215 4.215 18 C 0.262 3.738 19 O -0.362 6.362 20 C -0.208 4.208 21 H 0.061 0.939 22 H 0.021 0.979 23 H -0.024 1.024 24 H 0.160 0.840 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.601 -7.475 -2.294 10.233 hybrid contribution -1.226 -1.534 -0.346 1.994 sum 5.375 -9.009 -2.641 10.818 Atomic orbital electron populations 1.70902 1.08200 1.29492 1.49956 1.27198 0.96452 1.06454 0.93562 0.82975 0.74597 0.71449 0.77406 1.20668 1.18480 1.21639 1.22690 0.96227 0.91445 1.52587 0.90258 1.19585 0.90794 0.89927 0.92581 1.61976 1.27700 1.02787 1.29942 1.22992 0.91143 0.94642 1.00996 1.23489 0.96237 1.02801 1.03905 1.23027 1.03763 1.03041 0.90789 1.22204 0.94379 0.94982 0.89952 0.94092 1.22545 0.94703 0.97171 0.98803 1.23017 1.01945 0.94484 1.02052 1.25055 0.85770 0.89006 0.73920 1.90381 1.35546 1.58394 1.51882 1.22708 0.95406 0.99157 1.03508 0.93932 0.97911 1.02434 0.84036 0.91546 0.86796 0.85773 0.91441 0.91038 0.91227 0.87991 0.86188 0.87160 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 13.65 21.45 0.29 -57.02 16 2 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 3 Si 1.11 48.81 29.90 68.60 2.05 50.86 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.59 -31.22 7.50 25.60 0.19 -31.03 16 8 H 0.08 3.99 4.83 -2.91 -0.01 3.98 16 9 C 0.20 9.72 2.70 85.56 0.23 9.95 16 10 N -0.50 -19.73 4.59 -843.95 -3.87 -23.60 16 11 C 0.01 0.37 5.63 44.92 0.25 0.63 16 12 C -0.23 -7.40 9.54 30.59 0.29 -7.11 16 13 C -0.17 -5.32 9.94 30.60 0.30 -5.01 16 14 C 0.09 3.10 2.61 46.03 0.12 3.22 16 15 H 0.04 1.42 8.00 -2.39 -0.02 1.40 16 16 C -0.09 -3.14 4.42 31.92 0.14 -3.00 16 17 C -0.18 -4.50 6.72 30.86 0.21 -4.29 16 18 C 0.38 10.52 7.88 29.71 0.23 10.76 16 19 O -0.49 -15.77 17.99 -1.44 -0.03 -15.80 16 20 C -0.17 -4.42 4.84 30.52 0.15 -4.27 16 21 H 0.25 15.48 7.21 -92.71 -0.67 14.81 16 22 H 0.00 0.16 5.50 -2.39 -0.01 0.15 16 23 H -0.04 -2.24 7.71 -2.38 -0.02 -2.26 16 24 H 0.14 3.63 6.42 -2.39 -0.02 3.61 16 25 H 0.07 2.68 5.96 -2.38 -0.01 2.67 16 26 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.07 2.54 7.59 -2.39 -0.02 2.52 16 29 H 0.07 2.70 7.02 -2.38 -0.02 2.68 16 30 H 0.07 2.53 6.97 -2.39 -0.02 2.52 16 31 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 2.89 7.51 -2.39 -0.02 2.88 16 34 H 0.11 2.45 8.03 -2.39 -0.02 2.43 16 Total: -1.00 -64.24 270.01 2.22 -62.02 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.19 Total: 15.45 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 2.58 Total: -31.91 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -3.58 Total: -80.62 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.03 Total: -15.80 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.86 kcal Total: -64.24 2.22 -62.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086618137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.136 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds