Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00224 * 2 1 4 4 C 1.50699 * 109.46673 * 269.99840 * 3 2 1 5 5 H 1.07991 * 120.00645 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99442 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00193 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99596 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47040 * 90.00257 * 8 6 4 10 10 H 1.48500 * 109.46908 * 209.99848 * 8 6 4 11 11 H 1.48497 * 109.47162 * 330.00231 * 8 6 4 12 12 C 1.38995 * 120.00178 * 179.97438 * 2 1 3 13 13 C 1.39174 * 120.04367 * 184.72358 * 12 2 1 14 14 N 1.32039 * 120.07680 * 179.76021 * 13 12 2 15 15 C 1.32059 * 120.17091 * 0.51847 * 14 13 12 16 16 C 1.39129 * 120.08326 * 359.73949 * 15 14 13 17 17 N 1.39007 * 120.03870 * 179.97438 * 16 15 14 18 18 N 1.36594 * 119.99741 * 0.02562 * 17 16 15 19 19 N 1.32739 * 120.03948 * 5.00765 * 12 2 1 20 20 H 1.09001 * 109.47306 * 269.99883 * 1 2 3 21 21 H 1.08998 * 109.47019 * 30.00729 * 1 2 3 22 22 H 1.09000 * 109.47194 * 150.00102 * 1 2 3 23 23 H 1.09005 * 109.46767 * 29.99736 * 3 2 1 24 24 H 1.08996 * 109.47165 * 149.99564 * 3 2 1 25 25 H 0.96997 * 120.00024 * 179.97438 * 7 6 4 26 26 H 1.07998 * 119.96115 * 0.02562 * 13 12 2 27 27 H 1.08009 * 119.96077 * 179.75239 * 15 14 13 28 28 H 0.96994 * 119.99676 * 180.02562 * 17 16 15 29 29 H 1.00901 * 110.99727 * 179.97438 * 18 17 16 30 30 H 1.00895 * 111.00387 * 303.95434 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.3080 4.2589 -3.9015 10 1 4.6981 4.2001 -3.4961 11 1 3.5562 2.2193 -4.3044 12 6 2.1600 -1.2037 0.0005 13 6 3.5482 -1.2067 0.0997 14 7 4.2087 -2.3500 0.1051 15 6 3.5563 -3.4939 0.0061 16 6 2.1690 -3.4987 -0.0988 17 7 1.4833 -4.7034 -0.2035 18 7 2.1715 -5.8832 -0.2029 19 7 1.5009 -2.3516 -0.0993 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1384 0.5139 25 1 4.0303 4.4439 -0.8504 26 1 4.0855 -0.2730 0.1768 27 1 4.1004 -4.4270 0.0068 28 1 0.5161 -4.7060 -0.2770 29 1 1.5431 -6.6684 -0.2844 30 1 2.8655 -5.8975 -0.9351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087884120.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 90.921323 kcal Electronic energy + Delta-G solvation = -14944.131697 eV Core-core repulsion = 12389.880499 eV Total energy + Delta-G solvation = -2554.251198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.113 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.29414 -37.26467 -35.86594 -33.35577 -32.50749 -29.97959 -28.24276 -27.22726 -25.52071 -23.26624 -22.89386 -20.61261 -18.31982 -17.33799 -16.58746 -15.90770 -15.85640 -15.60347 -14.76065 -14.52176 -14.19099 -13.37043 -13.18150 -12.32993 -12.09491 -11.85418 -11.62883 -11.22093 -10.98494 -10.69741 -10.57701 -10.54884 -10.14487 -9.87213 -9.26575 -8.57655 -8.38572 -7.58907 -6.67477 -6.11799 -4.22740 1.92834 2.11523 2.80832 3.25266 3.32447 3.36733 3.86818 4.36373 4.60444 4.83957 5.17074 5.27387 5.37344 5.46346 5.87554 6.10457 6.13015 6.16130 6.39367 6.42763 6.84790 7.04449 7.18323 7.47002 7.57975 7.78576 8.06156 8.10966 8.19351 8.45823 8.76911 8.89188 9.44504 10.91151 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.039007 B = 0.006993 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.653420 B = 4002.834712 C = 4203.338135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.579 5.579 3 C 0.248 3.752 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.417 3.583 13 C -0.055 4.055 14 N -0.380 5.380 15 C -0.095 4.095 16 C 0.402 3.598 17 N -0.577 5.577 18 N -0.594 5.594 19 N -0.580 5.580 20 H 0.038 0.962 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.266 0.734 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.403 0.597 29 H 0.356 0.644 30 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -12.970 0.320 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.288 5.288 3 C 0.129 3.871 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.175 3.825 13 C -0.226 4.226 14 N -0.092 5.092 15 C -0.261 4.261 16 C 0.162 3.838 17 N -0.306 5.306 18 N -0.221 5.221 19 N -0.314 5.314 20 H 0.056 0.944 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.187 0.813 27 H 0.169 0.831 28 H 0.241 0.759 29 H 0.170 0.830 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.123 -12.513 1.103 13.221 hybrid contribution -0.750 0.080 -2.071 2.204 sum -4.873 -12.433 -0.968 13.389 Atomic orbital electron populations 1.21452 0.80485 1.02321 1.00050 1.47113 1.05455 1.03351 1.72863 1.19495 0.92298 0.77727 0.97590 1.21504 1.37042 1.06752 0.92274 0.92182 1.24934 0.95148 0.96147 0.97559 1.69916 1.37949 1.14312 1.30823 0.86484 0.77763 0.78689 0.84472 1.20572 1.20950 1.19855 1.19006 0.89636 0.85514 0.88366 1.22998 0.90871 0.97394 1.11337 1.68022 1.38753 0.97766 1.04645 1.22323 0.90136 0.97298 1.16297 1.18558 0.89414 0.84661 0.91124 1.42739 1.06630 0.99011 1.82186 1.60039 1.15057 0.94010 1.52964 1.67040 1.39374 0.96481 1.28542 0.94365 0.91427 0.91659 0.94171 0.94013 0.92459 0.81253 0.83077 0.75878 0.82988 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.51 59.85 0.63 2.47 16 2 N -0.58 -12.60 2.97 -183.00 -0.54 -13.14 16 3 C 0.25 6.08 5.01 -5.19 -0.03 6.05 16 4 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.42 9.00 7.37 -154.72 -1.14 7.86 16 13 C -0.06 -1.21 10.42 -17.12 -0.18 -1.39 16 14 N -0.38 -7.85 10.48 -12.70 -0.13 -7.98 16 15 C -0.09 -1.71 10.53 -17.12 -0.18 -1.89 16 16 C 0.40 6.99 7.71 -154.72 -1.19 5.80 16 17 N -0.58 -7.36 6.65 31.19 0.21 -7.15 16 18 N -0.59 -5.59 9.58 60.35 0.58 -5.01 16 19 N -0.58 -11.37 9.28 -11.42 -0.11 -11.48 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 22 H 0.06 1.14 7.32 -51.93 -0.38 0.76 16 23 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 24 H 0.04 1.06 6.00 -51.93 -0.31 0.75 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.17 3.87 6.03 -52.49 -0.32 3.55 16 27 H 0.15 2.31 7.02 -52.48 -0.37 1.94 16 28 H 0.40 4.52 8.95 -185.17 -1.66 2.86 16 29 H 0.36 2.11 9.21 -181.37 -1.67 0.44 16 30 H 0.34 2.86 8.42 -181.37 -1.53 1.34 16 LS Contribution 262.84 15.07 3.96 3.96 Total: -1.00 -30.38 262.84 -9.87 -40.24 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.04 Total: 2.91 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.51 Total: 5.85 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 0.74 Total: -69.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.38 -9.87 -40.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884120.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.163 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds