Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00224 * 2 1 4 4 C 1.50699 * 109.46673 * 269.99840 * 3 2 1 5 5 H 1.07991 * 120.00645 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99442 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00193 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99596 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47040 * 90.00257 * 8 6 4 10 10 H 1.48500 * 109.46908 * 209.99848 * 8 6 4 11 11 H 1.48497 * 109.47162 * 330.00231 * 8 6 4 12 12 C 1.38995 * 120.00178 * 179.97438 * 2 1 3 13 13 C 1.39174 * 120.04367 * 184.72358 * 12 2 1 14 14 N 1.32039 * 120.07680 * 179.76021 * 13 12 2 15 15 C 1.32059 * 120.17091 * 0.51847 * 14 13 12 16 16 C 1.39129 * 120.08326 * 359.73949 * 15 14 13 17 17 N 1.39007 * 120.03870 * 179.97438 * 16 15 14 18 18 N 1.36594 * 119.99741 * 0.02562 * 17 16 15 19 19 N 1.32739 * 120.03948 * 5.00765 * 12 2 1 20 20 H 1.09001 * 109.47306 * 269.99883 * 1 2 3 21 21 H 1.08998 * 109.47019 * 30.00729 * 1 2 3 22 22 H 1.09000 * 109.47194 * 150.00102 * 1 2 3 23 23 H 1.09005 * 109.46767 * 29.99736 * 3 2 1 24 24 H 1.08996 * 109.47165 * 149.99564 * 3 2 1 25 25 H 0.96997 * 120.00024 * 179.97438 * 7 6 4 26 26 H 1.07998 * 119.96115 * 0.02562 * 13 12 2 27 27 H 1.08009 * 119.96077 * 179.75239 * 15 14 13 28 28 H 0.96994 * 119.99676 * 180.02562 * 17 16 15 29 29 H 1.00901 * 110.99727 * 179.97438 * 18 17 16 30 30 H 1.00895 * 111.00387 * 303.95434 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.3080 4.2589 -3.9015 10 1 4.6981 4.2001 -3.4961 11 1 3.5562 2.2193 -4.3044 12 6 2.1600 -1.2037 0.0005 13 6 3.5482 -1.2067 0.0997 14 7 4.2087 -2.3500 0.1051 15 6 3.5563 -3.4939 0.0061 16 6 2.1690 -3.4987 -0.0988 17 7 1.4833 -4.7034 -0.2035 18 7 2.1715 -5.8832 -0.2029 19 7 1.5009 -2.3516 -0.0993 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1384 0.5139 25 1 4.0303 4.4439 -0.8504 26 1 4.0855 -0.2730 0.1768 27 1 4.1004 -4.4270 0.0068 28 1 0.5161 -4.7060 -0.2770 29 1 1.5431 -6.6684 -0.2844 30 1 2.8655 -5.8975 -0.9351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087884120.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 69.516252 kcal Electronic energy + Delta-G solvation = -14945.059890 eV Core-core repulsion = 12389.880499 eV Total energy + Delta-G solvation = -2555.179391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.113 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.78444 -38.55836 -37.35196 -35.07136 -34.28941 -31.37766 -29.96287 -28.57641 -27.12643 -25.11466 -24.36743 -22.19814 -19.55581 -18.72633 -18.58626 -17.34313 -17.26456 -17.01832 -16.43034 -16.14575 -15.49929 -15.01437 -14.76029 -14.04209 -13.78033 -13.30663 -13.09778 -13.01124 -12.78747 -12.50106 -12.23221 -12.11299 -12.02386 -11.65689 -10.71450 -10.62624 -9.93691 -8.88304 -8.30306 -8.01250 -6.36448 0.41762 0.57628 1.39581 1.41499 1.51385 1.63799 2.29057 2.44315 3.07514 3.08510 3.70430 3.77736 3.88574 4.23967 4.41389 4.66314 4.68652 4.77077 4.94578 5.00586 5.18973 5.35180 5.63515 5.71419 5.96300 6.05033 6.42843 6.59088 6.66985 6.84039 7.07000 7.33771 7.44838 8.84216 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.039007 B = 0.006993 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.653420 B = 4002.834712 C = 4203.338135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.591 5.591 3 C 0.264 3.736 4 C -0.547 4.547 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.406 3.594 13 C -0.094 4.094 14 N -0.392 5.392 15 C -0.086 4.086 16 C 0.405 3.595 17 N -0.557 5.557 18 N -0.597 5.597 19 N -0.583 5.583 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.269 0.731 26 H 0.146 0.854 27 H 0.183 0.817 28 H 0.414 0.586 29 H 0.380 0.620 30 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 -15.127 -0.485 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.300 5.300 3 C 0.143 3.857 4 C -0.585 4.585 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.165 3.835 13 C -0.262 4.262 14 N -0.105 5.105 15 C -0.255 4.255 16 C 0.162 3.838 17 N -0.283 5.283 18 N -0.227 5.227 19 N -0.318 5.318 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.200 0.800 28 H 0.254 0.746 29 H 0.197 0.803 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.872 -14.700 0.297 15.489 hybrid contribution -0.546 0.436 -1.788 1.919 sum -5.418 -14.264 -1.491 15.331 Atomic orbital electron populations 1.21547 0.78586 1.02627 1.01194 1.46965 1.06512 1.02624 1.73944 1.19063 0.91646 0.78839 0.96156 1.21678 1.37081 1.06806 0.92963 0.93328 1.25688 0.94859 0.96186 1.01335 1.70009 1.38565 1.14741 1.32682 0.85518 0.78003 0.78142 0.79772 1.19475 1.20356 1.20087 1.18969 0.89516 0.86073 0.88939 1.22620 0.91260 0.97197 1.15135 1.67954 1.39433 0.98204 1.04866 1.22869 0.90805 0.97434 1.14404 1.18805 0.89707 0.85487 0.89814 1.42710 1.07227 0.98723 1.79628 1.59957 1.15795 0.93171 1.53801 1.67094 1.39204 0.96495 1.29046 0.92751 0.91594 0.90762 0.95405 0.95772 0.92196 0.83678 0.80005 0.74573 0.80268 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.75 10.51 127.77 1.34 5.09 16 2 N -0.59 -26.24 2.97 -732.88 -2.18 -28.42 16 3 C 0.26 13.45 5.01 85.63 0.43 13.88 16 4 C -0.55 -30.08 9.39 25.60 0.24 -29.84 16 5 H 0.05 2.73 7.81 -2.92 -0.02 2.71 16 6 C 0.02 1.07 5.46 84.66 0.46 1.53 16 7 N -0.92 -52.69 13.29 21.45 0.28 -52.40 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.41 17.71 7.37 132.97 0.98 18.69 16 13 C -0.09 -4.28 10.42 84.89 0.88 -3.40 16 14 N -0.39 -16.17 10.48 -194.09 -2.03 -18.20 16 15 C -0.09 -2.93 10.53 84.87 0.89 -2.04 16 16 C 0.41 13.12 7.71 132.96 1.02 14.15 16 17 N -0.56 -12.12 6.65 -55.24 -0.37 -12.49 16 18 N -0.60 -8.65 9.58 37.02 0.35 -8.29 16 19 N -0.58 -22.14 9.28 -190.06 -1.76 -23.91 16 20 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 22 H 0.07 2.52 7.32 -2.39 -0.02 2.51 16 23 H 0.03 1.47 8.07 -2.38 -0.02 1.45 16 24 H 0.02 1.32 6.00 -2.39 -0.01 1.30 16 25 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.15 7.13 6.03 -2.91 -0.02 7.12 16 27 H 0.18 4.90 7.02 -2.91 -0.02 4.88 16 28 H 0.41 7.68 8.95 -215.51 -1.93 5.75 16 29 H 0.38 2.77 9.21 -210.56 -1.94 0.83 16 30 H 0.35 4.39 8.42 -210.57 -1.77 2.62 16 Total: -1.00 -65.59 262.84 -1.86 -67.45 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.44 Total: 12.62 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.26 Total: 18.07 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -5.70 Total: -143.71 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.59 -1.86 -67.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884120.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.971 kcal (2) G-P(sol) polarization free energy of solvation -65.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds