Wall clock time and date at job start Mon Mar 30 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.55922 * 115.85280 * 2 1 4 4 C 1.54615 * 104.58437 * 159.95904 * 3 2 1 5 5 C 1.55976 * 104.46529 * 0.33327 * 4 3 2 6 6 H 1.09003 * 116.07928 * 198.28334 * 5 4 3 7 7 C 1.55961 * 104.30878 * 69.20293 * 5 4 3 8 8 C 1.53522 * 115.83995 * 236.97694 * 2 1 3 9 9 N 1.27953 * 127.33232 * 19.69285 * 8 2 1 10 10 O 1.41604 * 119.99660 * 0.02562 * 9 8 2 11 11 C 1.56929 * 116.14285 * 117.87945 * 2 1 3 12 12 C 1.52998 * 112.08586 * 296.85701 * 11 2 1 13 13 C 1.50707 * 112.08686 * 63.53741 * 11 2 1 14 14 H 1.07993 * 119.99989 * 0.02562 * 13 11 2 15 15 C 1.37878 * 119.99969 * 180.02562 * 13 11 2 16 16 N 1.31516 * 119.99633 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99875 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47265 * 90.00165 * 17 15 13 19 19 H 1.48507 * 109.47063 * 209.99802 * 17 15 13 20 20 H 1.48500 * 109.47286 * 329.99770 * 17 15 13 21 21 H 1.09002 * 109.47153 * 61.01185 * 1 2 3 22 22 H 1.09001 * 109.46832 * 301.01376 * 1 2 3 23 23 H 1.09004 * 109.47261 * 181.01357 * 1 2 3 24 24 H 1.08997 * 110.41289 * 278.73832 * 3 2 1 25 25 H 1.09003 * 110.41319 * 41.18829 * 3 2 1 26 26 H 1.09005 * 110.43477 * 119.07901 * 4 3 2 27 27 H 1.08995 * 110.43831 * 241.46333 * 4 3 2 28 28 H 1.08999 * 110.35711 * 48.46795 * 7 5 4 29 29 H 1.09005 * 110.36167 * 170.66203 * 7 5 4 30 30 H 0.96701 * 113.99612 * 179.97438 * 10 9 8 31 31 H 1.09006 * 109.47048 * 59.99918 * 12 11 2 32 32 H 1.09002 * 109.47222 * 179.97438 * 12 11 2 33 33 H 1.08994 * 109.47715 * 299.99766 * 12 11 2 34 34 H 0.97004 * 119.99530 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2099 1.4032 0.0000 4 6 3.6447 1.1405 0.5128 5 6 3.6931 -0.3981 0.7641 6 1 4.4964 -0.7531 1.4097 7 6 3.6325 -1.0238 -0.6632 8 6 2.1991 -0.7530 -1.1585 9 7 1.6752 -1.0737 -2.2809 10 8 0.3303 -0.7285 -2.5588 11 6 2.2214 -0.6587 1.2452 12 6 1.8999 0.0858 2.5426 13 6 1.9125 -2.1299 1.3527 14 1 1.2796 -2.6039 0.6171 15 6 2.4378 -2.8707 2.3901 16 7 3.2081 -2.2933 3.2862 17 14 2.0555 -4.6942 2.5228 18 1 3.0800 -5.4703 1.7789 19 1 2.0681 -5.1000 3.9514 20 1 0.7145 -4.9623 1.9439 21 1 -0.3633 0.4980 -0.8989 22 1 -0.3633 0.5295 0.8808 23 1 -0.3634 -1.0275 0.0182 24 1 2.2360 1.8130 -1.0097 25 1 1.6838 2.0805 0.6727 26 1 4.3770 1.4261 -0.2425 27 1 3.8232 1.6852 1.4398 28 1 4.3531 -0.5380 -1.3211 29 1 3.8257 -2.0956 -0.6160 30 1 0.0236 -1.0123 -3.4309 31 1 0.8226 0.0779 2.7087 32 1 2.3995 -0.4061 3.3772 33 1 2.2482 1.1158 2.4664 34 1 3.5781 -2.8146 4.0158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100099534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:27 Heat of formation + Delta-G solvation = -10.284742 kcal Electronic energy + Delta-G solvation = -16587.394163 eV Core-core repulsion = 14100.001933 eV Total energy + Delta-G solvation = -2487.392230 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49592 -37.34898 -34.81254 -33.35684 -32.36365 -30.62622 -29.31186 -26.85747 -25.82722 -24.25818 -21.54674 -20.07743 -19.31267 -18.17452 -17.21140 -16.64543 -16.25921 -15.70358 -15.54355 -14.72753 -14.03847 -13.87661 -13.69854 -13.59363 -13.06643 -12.92342 -12.80215 -12.68670 -12.55443 -12.44792 -12.03302 -11.84103 -11.71066 -11.61438 -11.10850 -10.97130 -10.58809 -10.30414 -10.04829 -9.87092 -7.96369 -6.08598 1.33205 1.40106 1.43473 1.50226 2.23146 2.46752 3.24826 3.67364 3.91284 4.06063 4.35099 4.43544 4.50347 4.61447 4.71722 4.79308 4.90753 4.99521 5.05417 5.12836 5.15948 5.27490 5.32307 5.36757 5.40308 5.47650 5.55130 5.72454 5.80568 5.95746 6.24706 6.35356 6.55024 6.93444 7.08907 7.57170 9.02112 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.013229 C = 0.011130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.901263 B = 2115.995033 C = 2515.113219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.078 4.078 3 C -0.100 4.100 4 C -0.116 4.116 5 C -0.086 4.086 6 H 0.089 0.911 7 C -0.042 4.042 8 C 0.160 3.840 9 N -0.375 5.375 10 O -0.422 6.422 11 C 0.083 3.917 12 C -0.128 4.128 13 C -0.502 4.502 14 H 0.028 0.972 15 C 0.035 3.965 16 N -0.895 5.895 17 Si 0.928 3.072 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.285 1.285 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.404 0.596 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 5.790 -5.706 8.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.153 4.153 5 C -0.106 4.106 6 H 0.107 0.893 7 C -0.081 4.081 8 C -0.032 4.032 9 N -0.119 5.119 10 O -0.328 6.328 11 C 0.082 3.918 12 C -0.185 4.185 13 C -0.540 4.540 14 H 0.046 0.954 15 C -0.164 4.164 16 N -0.534 5.534 17 Si 0.755 3.245 18 H -0.205 1.205 19 H -0.208 1.208 20 H -0.210 1.210 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.355 5.566 -5.860 8.090 hybrid contribution -0.932 -1.264 0.229 1.587 sum -0.577 4.301 -5.632 7.110 Atomic orbital electron populations 1.21102 0.93312 1.00188 1.00615 1.22725 0.94508 0.95685 0.95175 1.22450 0.96397 0.94753 1.00209 1.22675 0.95793 0.96084 1.00796 1.23471 1.00095 0.93576 0.93423 0.89275 1.21739 0.88142 1.01470 0.96723 1.26669 0.97957 0.89112 0.89461 1.75699 0.95504 1.20822 1.19922 1.88525 1.21622 1.81047 1.41575 1.19999 0.90149 0.92178 0.89439 1.21680 0.98160 0.97696 1.00975 1.20972 1.29328 0.94487 1.09247 0.95350 1.25310 0.95258 1.00313 0.95559 1.69890 1.33539 1.35780 1.14240 0.86040 0.78060 0.83291 0.77064 1.20452 1.20810 1.21026 0.92169 0.92711 0.95189 0.92563 0.90913 0.90825 0.91294 0.89064 0.91258 0.74765 0.96629 0.90800 0.94114 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.79 7.99 71.98 0.58 -3.21 16 2 C -0.08 -3.16 0.85 -49.62 -0.04 -3.21 16 3 C -0.10 -3.38 5.22 32.16 0.17 -3.21 16 4 C -0.12 -3.81 5.55 32.17 0.18 -3.63 16 5 C -0.09 -3.49 4.41 -7.33 -0.03 -3.52 16 6 H 0.09 3.91 8.13 -2.39 -0.02 3.90 16 7 C -0.04 -1.64 5.61 31.98 0.18 -1.46 16 8 C 0.16 6.56 6.01 48.56 0.29 6.85 16 9 N -0.38 -15.02 12.13 -36.43 -0.44 -15.46 16 10 O -0.42 -14.89 11.97 -38.79 -0.46 -15.35 16 11 C 0.08 3.75 0.34 -50.14 -0.02 3.74 16 12 C -0.13 -5.72 8.25 71.98 0.59 -5.13 16 13 C -0.50 -26.19 6.73 25.60 0.17 -26.01 16 14 H 0.03 1.59 7.43 -2.91 -0.02 1.57 16 15 C 0.04 1.85 5.30 84.65 0.45 2.30 16 16 N -0.90 -47.16 10.82 21.45 0.23 -46.93 16 17 Si 0.93 42.96 29.54 68.60 2.03 44.98 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 21 H 0.06 2.23 6.66 -2.39 -0.02 2.22 16 22 H 0.05 2.06 7.49 -2.39 -0.02 2.04 16 23 H 0.03 1.31 7.88 -2.38 -0.02 1.29 16 24 H 0.06 1.80 8.02 -2.39 -0.02 1.78 16 25 H 0.07 2.32 7.56 -2.39 -0.02 2.30 16 26 H 0.07 2.07 7.85 -2.38 -0.02 2.05 16 27 H 0.07 2.17 7.22 -2.39 -0.02 2.15 16 28 H 0.09 2.95 7.84 -2.39 -0.02 2.93 16 29 H 0.07 2.90 7.99 -2.38 -0.02 2.88 16 30 H 0.40 9.91 9.28 -74.06 -0.69 9.22 16 31 H 0.01 0.67 7.46 -2.38 -0.02 0.65 16 32 H 0.07 3.70 5.60 -2.39 -0.01 3.69 16 33 H 0.04 1.59 5.40 -2.39 -0.01 1.57 16 34 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -57.73 262.17 4.28 -53.45 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.41 Total: 15.80 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 2.52 Total: -36.50 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.21 Total: -62.38 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.46 Total: -15.35 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -57.73 4.28 -53.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100099534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.161 kcal (2) G-P(sol) polarization free energy of solvation -57.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds