Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47104 * 240.00054 * 3 2 1 5 5 H 1.48503 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47193 * 120.00092 * 3 2 1 7 7 C 1.37874 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00046 * 189.86182 * 7 2 1 9 9 C 1.50706 * 120.00235 * 10.13794 * 7 2 1 10 10 C 1.53009 * 115.54597 * 33.91336 * 9 7 2 11 11 N 1.46897 * 109.47221 * 66.90634 * 10 9 7 12 12 C 1.46802 * 111.00210 * 299.45843 * 11 10 9 13 13 C 1.53010 * 109.89728 * 189.45423 * 12 11 10 14 14 C 1.53385 * 109.13407 * 297.14481 * 13 12 11 15 15 C 1.51419 * 108.11748 * 52.46405 * 14 13 12 16 16 O 1.20759 * 121.00523 * 130.92524 * 15 14 13 17 17 C 1.47093 * 111.00067 * 63.62875 * 11 10 9 18 18 C 1.52997 * 117.49982 * 248.24327 * 9 7 2 19 19 C 1.52993 * 117.50199 * 179.57992 * 9 7 2 20 20 H 0.97002 * 120.00253 * 4.95569 * 1 2 3 21 21 H 1.08994 * 109.46693 * 186.90657 * 10 9 7 22 22 H 1.09003 * 109.46936 * 306.90447 * 10 9 7 23 23 H 1.08991 * 109.39994 * 309.58793 * 12 11 10 24 24 H 1.09007 * 109.39755 * 69.32509 * 12 11 10 25 25 H 1.08996 * 109.52946 * 177.25214 * 13 12 11 26 26 H 1.09002 * 109.58606 * 57.07583 * 13 12 11 27 27 H 1.09002 * 109.73405 * 292.81143 * 14 13 12 28 28 H 1.09003 * 109.77308 * 172.14040 * 14 13 12 29 29 H 1.09004 * 109.62728 * 299.45761 * 17 11 10 30 30 H 1.09001 * 109.62533 * 60.02209 * 17 11 10 31 31 H 1.08995 * 117.49666 * 359.97438 * 18 9 7 32 32 H 1.09000 * 117.49817 * 145.01622 * 18 9 7 33 33 H 1.08998 * 117.50160 * 214.98128 * 19 9 7 34 34 H 1.09002 * 117.49478 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0725 -1.2009 0.1607 9 6 1.2687 -2.4891 -0.2286 10 6 0.0795 -2.4115 -1.1883 11 7 0.5630 -2.1216 -2.5448 12 6 1.2729 -0.8373 -2.5870 13 6 1.5586 -0.4478 -4.0389 14 6 2.4854 -1.4958 -4.6676 15 6 1.8713 -2.8618 -4.4446 16 8 1.7530 -3.6467 -5.3546 17 6 1.4107 -3.2138 -3.0469 18 6 1.1638 -3.4600 0.9492 19 6 2.0913 -3.7791 -0.2261 20 1 -0.4850 0.8369 -0.0726 21 1 -0.4508 -3.3637 -1.1873 22 1 -0.5961 -1.6190 -0.8662 23 1 0.6579 -0.0682 -2.1201 24 1 2.2139 -0.9258 -2.0440 25 1 2.0419 0.5288 -4.0657 26 1 0.6232 -0.4069 -4.5970 27 1 3.4661 -1.4514 -4.1938 28 1 2.5843 -1.3068 -5.7365 29 1 2.2765 -3.3343 -2.3956 30 1 0.8369 -4.1402 -3.0728 31 1 1.6274 -3.1623 1.8896 32 1 0.2478 -4.0438 1.0402 33 1 1.7851 -4.5726 -0.9077 34 1 3.1648 -3.6910 -0.0591 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134128486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = 1.079670 kcal Electronic energy + Delta-G solvation = -16443.292711 eV Core-core repulsion = 13956.393279 eV Total energy + Delta-G solvation = -2486.899432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.50811 -37.76125 -35.17981 -32.62353 -31.96502 -28.38840 -26.16408 -25.79592 -22.57735 -21.46347 -21.07191 -19.14430 -18.35832 -16.40183 -15.38064 -15.13973 -14.83850 -14.39629 -14.22811 -13.96258 -13.57250 -12.84788 -12.55765 -12.28448 -11.83968 -11.71564 -11.42360 -11.00884 -10.99628 -10.60187 -10.48514 -10.32344 -10.08031 -9.97129 -9.61626 -9.20309 -8.92583 -8.87680 -8.07940 -7.24774 -6.17516 -4.19942 2.37980 3.15380 3.23148 3.25515 4.20237 4.57839 4.75994 5.06912 5.28742 5.42565 5.49320 5.53377 5.92251 5.99503 6.12654 6.20495 6.25181 6.29031 6.38618 6.41325 6.55537 6.59601 6.65715 6.87774 6.98531 7.17925 7.28808 7.38715 7.47383 7.81936 7.89166 8.07929 8.15905 8.36299 8.69470 9.31534 10.76516 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.013698 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.221250 B = 2043.621181 C = 2737.340239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.076 3.924 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.484 4.484 8 H 0.059 0.941 9 C 0.020 3.980 10 C 0.076 3.924 11 N -0.512 5.512 12 C 0.034 3.966 13 C -0.118 4.118 14 C -0.169 4.169 15 C 0.374 3.626 16 O -0.478 6.478 17 C -0.005 4.005 18 C -0.200 4.200 19 C -0.218 4.218 20 H 0.266 0.734 21 H 0.033 0.967 22 H 0.141 0.859 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -0.284 -3.884 4.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.127 4.127 3 Si 0.707 3.293 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.521 4.521 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.051 4.051 11 N -0.237 5.237 12 C -0.094 4.094 13 C -0.156 4.156 14 C -0.207 4.207 15 C 0.251 3.749 16 O -0.352 6.352 17 C -0.133 4.133 18 C -0.238 4.238 19 C -0.255 4.255 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.158 0.842 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.814 -0.511 -4.626 4.995 hybrid contribution 1.308 0.655 0.719 1.630 sum 3.123 0.144 -3.907 5.004 Atomic orbital electron populations 1.69710 1.05744 1.27072 1.48265 1.24915 0.94783 0.98901 0.94058 0.86828 0.80107 0.83205 0.79165 1.19495 1.20810 1.20124 1.20455 0.93663 0.89462 1.48545 0.92265 1.19806 0.95339 0.88330 0.94693 1.22240 0.97112 1.01770 0.83951 1.62602 1.35760 1.00806 1.24494 1.22777 1.01595 0.92164 0.92820 1.21758 0.98441 0.96874 0.98538 1.22364 1.00944 0.95167 1.02265 1.25057 0.72562 0.87360 0.89900 1.90325 1.46790 1.52014 1.46092 1.23019 0.99155 0.97357 0.93806 1.22896 0.99528 1.07347 0.94064 1.22997 0.96846 1.02529 1.03143 0.92310 0.94895 0.84217 0.88433 0.90152 0.91440 0.91873 0.88859 0.90431 0.90029 0.89957 0.90631 0.91628 0.91276 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.47 9.38 55.43 0.52 -20.96 16 2 C 0.08 1.81 2.82 -17.82 -0.05 1.76 16 3 Si 0.88 18.83 29.21 -169.99 -4.97 13.87 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.48 -11.75 6.41 -34.44 -0.22 -11.97 16 8 H 0.06 1.47 7.83 -52.49 -0.41 1.05 16 9 C 0.02 0.45 1.49 -155.66 -0.23 0.22 16 10 C 0.08 1.69 5.11 -3.82 -0.02 1.67 16 11 N -0.51 -10.53 4.86 -235.60 -1.15 -11.67 16 12 C 0.03 0.69 3.45 -3.87 -0.01 0.67 16 13 C -0.12 -1.99 6.13 -26.53 -0.16 -2.15 16 14 C -0.17 -2.68 6.24 -27.33 -0.17 -2.85 16 15 C 0.37 6.86 6.87 -28.38 -0.20 6.66 16 16 O -0.48 -9.74 17.90 6.00 0.11 -9.63 16 17 C 0.00 -0.09 4.60 -4.57 -0.02 -0.11 16 18 C -0.20 -4.31 9.92 -26.69 -0.26 -4.58 16 19 C -0.22 -4.45 7.78 -26.70 -0.21 -4.66 16 20 H 0.27 6.34 8.32 -40.82 -0.34 6.00 16 21 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 22 H 0.14 3.43 5.24 -51.93 -0.27 3.15 16 23 H 0.10 2.16 5.24 -51.93 -0.27 1.89 16 24 H 0.08 1.75 5.30 -51.93 -0.28 1.47 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.57 5.35 -51.93 -0.28 1.29 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.32 7.15 -51.93 -0.37 0.95 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 261.14 15.07 3.94 3.94 Total: -1.00 -25.07 261.14 -7.92 -33.00 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.82 Total: 6.80 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.56 Total: -15.34 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.63 Total: -32.63 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.11 Total: -9.63 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.97 Total: 13.87 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.07 -7.92 -33.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134128486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.076 kcal (2) G-P(sol) polarization free energy of solvation -25.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds