Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47104 * 240.00054 * 3 2 1 5 5 H 1.48503 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47193 * 120.00092 * 3 2 1 7 7 C 1.37874 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00046 * 189.86182 * 7 2 1 9 9 C 1.50706 * 120.00235 * 10.13794 * 7 2 1 10 10 C 1.53009 * 115.54597 * 33.91336 * 9 7 2 11 11 N 1.46897 * 109.47221 * 66.90634 * 10 9 7 12 12 C 1.46802 * 111.00210 * 299.45843 * 11 10 9 13 13 C 1.53010 * 109.89728 * 189.45423 * 12 11 10 14 14 C 1.53385 * 109.13407 * 297.14481 * 13 12 11 15 15 C 1.51419 * 108.11748 * 52.46405 * 14 13 12 16 16 O 1.20759 * 121.00523 * 130.92524 * 15 14 13 17 17 C 1.47093 * 111.00067 * 63.62875 * 11 10 9 18 18 C 1.52997 * 117.49982 * 248.24327 * 9 7 2 19 19 C 1.52993 * 117.50199 * 179.57992 * 9 7 2 20 20 H 0.97002 * 120.00253 * 4.95569 * 1 2 3 21 21 H 1.08994 * 109.46693 * 186.90657 * 10 9 7 22 22 H 1.09003 * 109.46936 * 306.90447 * 10 9 7 23 23 H 1.08991 * 109.39994 * 309.58793 * 12 11 10 24 24 H 1.09007 * 109.39755 * 69.32509 * 12 11 10 25 25 H 1.08996 * 109.52946 * 177.25214 * 13 12 11 26 26 H 1.09002 * 109.58606 * 57.07583 * 13 12 11 27 27 H 1.09002 * 109.73405 * 292.81143 * 14 13 12 28 28 H 1.09003 * 109.77308 * 172.14040 * 14 13 12 29 29 H 1.09004 * 109.62728 * 299.45761 * 17 11 10 30 30 H 1.09001 * 109.62533 * 60.02209 * 17 11 10 31 31 H 1.08995 * 117.49666 * 359.97438 * 18 9 7 32 32 H 1.09000 * 117.49817 * 145.01622 * 18 9 7 33 33 H 1.08998 * 117.50160 * 214.98128 * 19 9 7 34 34 H 1.09002 * 117.49478 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0725 -1.2009 0.1607 9 6 1.2687 -2.4891 -0.2286 10 6 0.0795 -2.4115 -1.1883 11 7 0.5630 -2.1216 -2.5448 12 6 1.2729 -0.8373 -2.5870 13 6 1.5586 -0.4478 -4.0389 14 6 2.4854 -1.4958 -4.6676 15 6 1.8713 -2.8618 -4.4446 16 8 1.7530 -3.6467 -5.3546 17 6 1.4107 -3.2138 -3.0469 18 6 1.1638 -3.4600 0.9492 19 6 2.0913 -3.7791 -0.2261 20 1 -0.4850 0.8369 -0.0726 21 1 -0.4508 -3.3637 -1.1873 22 1 -0.5961 -1.6190 -0.8662 23 1 0.6579 -0.0682 -2.1201 24 1 2.2139 -0.9258 -2.0440 25 1 2.0419 0.5288 -4.0657 26 1 0.6232 -0.4069 -4.5970 27 1 3.4661 -1.4514 -4.1938 28 1 2.5843 -1.3068 -5.7365 29 1 2.2765 -3.3343 -2.3956 30 1 0.8369 -4.1402 -3.0728 31 1 1.6274 -3.1623 1.8896 32 1 0.2478 -4.0438 1.0402 33 1 1.7851 -4.5726 -0.9077 34 1 3.1648 -3.6910 -0.0591 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134128486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = -13.347216 kcal Electronic energy + Delta-G solvation = -16443.918307 eV Core-core repulsion = 13956.393279 eV Total energy + Delta-G solvation = -2487.525028 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04044 -39.39175 -36.76874 -34.44072 -33.43566 -29.93622 -27.74891 -27.62161 -24.08131 -23.11398 -22.66046 -20.89961 -19.82816 -18.17889 -16.92678 -16.79389 -16.42919 -15.93077 -15.70779 -15.59639 -15.21004 -14.47953 -14.15508 -13.76849 -13.45995 -13.27937 -13.09276 -12.71878 -12.52956 -12.28588 -12.08602 -11.88216 -11.72859 -11.58627 -11.32440 -10.91372 -10.63627 -10.41721 -9.85006 -8.89187 -7.99647 -6.06776 0.92495 1.44909 1.50424 1.54534 2.43767 2.96382 3.18063 3.47296 3.68662 3.91999 4.14551 4.20104 4.31548 4.52167 4.55901 4.66105 4.72206 4.80206 4.90469 4.93255 4.98000 5.01352 5.10167 5.17840 5.37978 5.50324 5.58113 5.63303 5.75519 6.07621 6.29140 6.44825 6.48995 6.64390 6.84354 7.46189 8.92960 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.013698 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.221250 B = 2043.621181 C = 2737.340239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.051 3.949 3 Si 0.924 3.076 4 H -0.255 1.255 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.049 0.951 9 C 0.000 4.000 10 C 0.083 3.917 11 N -0.516 5.516 12 C 0.038 3.962 13 C -0.113 4.113 14 C -0.162 4.162 15 C 0.378 3.622 16 O -0.499 6.499 17 C -0.003 4.003 18 C -0.206 4.206 19 C -0.196 4.196 20 H 0.265 0.735 21 H 0.035 0.965 22 H 0.117 0.883 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -0.040 -4.941 5.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.750 3.250 4 H -0.179 1.179 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.534 4.534 8 H 0.067 0.933 9 C -0.002 4.002 10 C -0.044 4.044 11 N -0.240 5.240 12 C -0.090 4.090 13 C -0.150 4.150 14 C -0.199 4.199 15 C 0.256 3.744 16 O -0.375 6.375 17 C -0.132 4.132 18 C -0.245 4.245 19 C -0.233 4.233 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.134 0.866 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.727 -0.268 -5.685 6.311 hybrid contribution 1.006 0.550 1.092 1.584 sum 3.733 0.282 -4.593 5.925 Atomic orbital electron populations 1.69824 1.06639 1.27405 1.48796 1.25326 0.95165 1.00812 0.93673 0.86144 0.79166 0.80482 0.79238 1.17940 1.20960 1.20979 1.20542 0.93231 0.90568 1.49076 0.93325 1.19862 0.96176 0.88632 0.95498 1.22017 0.96694 1.00895 0.84838 1.62579 1.36457 1.01545 1.23452 1.22632 1.00073 0.91379 0.94881 1.21707 0.99067 0.98183 0.96093 1.22352 1.01087 0.92707 1.03768 1.25229 0.71973 0.88204 0.88981 1.90327 1.47793 1.52972 1.46402 1.23003 0.98842 0.96813 0.94507 1.22912 1.00348 1.07393 0.93806 1.22959 0.96635 1.01492 1.02226 0.92487 0.94644 0.86569 0.90619 0.91660 0.89341 0.91825 0.87116 0.88257 0.90124 0.90002 0.91530 0.90723 0.89747 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.09 9.38 21.45 0.20 -43.89 16 2 C 0.05 2.43 2.82 84.65 0.24 2.66 16 3 Si 0.92 38.01 29.21 68.60 2.00 40.02 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.50 -24.00 6.41 25.60 0.16 -23.84 16 8 H 0.05 2.40 7.83 -2.91 -0.02 2.37 16 9 C 0.00 0.00 1.49 -52.93 -0.08 -0.08 16 10 C 0.08 3.66 5.11 86.31 0.44 4.10 16 11 N -0.52 -20.73 4.86 -899.30 -4.37 -25.10 16 12 C 0.04 1.49 3.45 86.33 0.30 1.79 16 13 C -0.11 -3.49 6.13 30.73 0.19 -3.30 16 14 C -0.16 -4.58 6.24 30.21 0.19 -4.39 16 15 C 0.38 12.98 6.87 29.53 0.20 13.18 16 16 O -0.50 -19.32 17.90 -1.45 -0.03 -19.35 16 17 C 0.00 -0.12 4.60 85.72 0.39 0.28 16 18 C -0.21 -8.76 9.92 30.62 0.30 -8.46 16 19 C -0.20 -7.74 7.78 30.62 0.24 -7.50 16 20 H 0.26 12.71 8.32 -92.71 -0.77 11.94 16 21 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 22 H 0.12 5.76 5.24 -2.39 -0.01 5.75 16 23 H 0.08 3.31 5.24 -2.39 -0.01 3.30 16 24 H 0.07 2.76 5.30 -2.38 -0.01 2.74 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.08 2.97 5.35 -2.39 -0.01 2.95 16 30 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 31 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.08 3.06 7.15 -2.39 -0.02 3.04 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -51.84 261.14 1.47 -50.37 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.08 Total: 23.50 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 2.58 Total: -25.55 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -4.17 Total: -68.99 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.03 Total: -19.35 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.00 Total: 40.02 kcal Total: -51.84 1.47 -50.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134128486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.026 kcal (2) G-P(sol) polarization free energy of solvation -51.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds