Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48496 * 109.47092 * 239.99660 * 3 2 1 5 5 H 1.48495 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47023 * 119.99717 * 3 2 1 7 7 C 1.40049 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00776 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99517 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00021 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99813 * 180.02562 * 9 7 2 12 12 C 1.48214 * 126.44275 * 0.02562 * 11 9 7 13 13 C 1.55344 * 107.03239 * 174.93514 * 12 11 9 14 14 C 1.53666 * 101.77955 * 337.53018 * 13 12 11 15 15 H 1.08997 * 111.70778 * 281.24458 * 14 13 12 16 16 C 1.51935 * 115.22239 * 153.33798 * 14 13 12 17 17 C 1.53700 * 107.28735 * 185.16929 * 16 14 13 18 18 C 1.52577 * 111.49646 * 58.13035 * 17 16 14 19 19 C 1.53776 * 111.37205 * 305.14993 * 18 17 16 20 20 C 1.45390 * 126.43995 * 179.97438 * 11 9 7 21 21 H 1.08999 * 108.66248 * 94.37768 * 20 11 9 22 22 H 0.97001 * 119.99744 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.91454 * 294.27560 * 12 11 9 24 24 H 1.08996 * 109.92347 * 55.58401 * 12 11 9 25 25 H 1.08998 * 110.96184 * 219.40777 * 13 12 11 26 26 H 1.08998 * 110.96643 * 95.65973 * 13 12 11 27 27 H 1.09001 * 109.89147 * 304.61455 * 16 14 13 28 28 H 1.08993 * 109.88729 * 65.72188 * 16 14 13 29 29 H 1.09003 * 109.07132 * 297.61716 * 17 16 14 30 30 H 1.08998 * 109.01938 * 178.61967 * 17 16 14 31 31 H 1.09002 * 109.09821 * 184.66168 * 18 17 16 32 32 H 1.09002 * 109.09926 * 65.63848 * 18 17 16 33 33 H 1.08992 * 109.88126 * 297.81333 * 19 18 17 34 34 H 1.08998 * 109.93974 * 176.77006 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6964 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 3.4216 -3.8140 0.0033 13 6 3.7076 -5.3352 0.1351 14 6 2.4041 -5.8457 0.7689 15 1 2.3712 -5.6457 1.8398 16 6 2.0665 -7.2976 0.4748 17 6 0.6805 -7.5754 1.0782 18 6 -0.3775 -6.6380 0.5040 19 6 0.0257 -5.1643 0.6779 20 6 1.3677 -4.9804 0.0023 21 1 1.3010 -5.3323 -1.0272 22 1 -0.4850 0.8401 -0.0004 23 1 3.8390 -3.4372 -0.9305 24 1 3.8547 -3.2800 0.8491 25 1 4.5580 -5.5166 0.7924 26 1 3.8692 -5.7879 -0.8431 27 1 2.0417 -7.4617 -0.6025 28 1 2.8085 -7.9510 0.9334 29 1 0.7286 -7.4390 2.1586 30 1 0.3989 -8.6059 0.8617 31 1 -1.3238 -6.8118 1.0162 32 1 -0.5037 -6.8504 -0.5577 33 1 0.1092 -4.9255 1.7381 34 1 -0.7169 -4.5180 0.2100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134820746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -53.966376 kcal Electronic energy + Delta-G solvation = -15936.577336 eV Core-core repulsion = 13447.290928 eV Total energy + Delta-G solvation = -2489.286407 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61287 -36.41663 -34.52495 -32.52186 -31.24886 -29.08672 -27.82984 -26.02281 -22.31608 -22.24020 -20.57402 -19.80429 -18.78640 -16.37814 -15.41457 -15.10099 -14.45710 -14.28073 -14.02284 -13.61100 -13.21789 -12.70661 -12.44770 -12.07078 -11.95308 -11.50885 -11.24777 -11.13323 -10.86218 -10.76823 -10.72358 -10.38674 -10.37229 -10.15129 -10.09618 -9.99004 -9.43767 -8.82119 -7.48468 -7.09334 -6.15694 -4.60922 3.16908 3.21581 3.23556 4.10868 4.53337 4.58883 4.96286 5.01969 5.10573 5.39331 5.44023 5.59633 5.71454 5.82740 5.85016 5.90167 5.92210 5.99321 6.11600 6.14116 6.27007 6.41795 6.43981 6.46708 6.51791 6.67242 6.75566 7.00660 7.11106 7.46094 7.46995 8.17654 8.51741 9.05038 9.56993 10.61860 10.81715 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045775 B = 0.008138 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.541300 B = 3439.633294 C = 3957.763069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.574 3.426 10 O -0.572 6.572 11 N -0.641 5.641 12 C 0.121 3.879 13 C -0.126 4.126 14 C -0.111 4.111 15 H 0.079 0.921 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.115 4.115 20 C 0.150 3.850 21 H 0.041 0.959 22 H 0.268 0.732 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -10.976 1.159 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.380 3.620 10 O -0.454 6.454 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.164 4.164 14 C -0.130 4.130 15 H 0.097 0.903 16 C -0.142 4.142 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.153 4.153 20 C 0.044 3.956 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.554 -10.753 1.147 11.734 hybrid contribution 0.622 0.813 0.008 1.024 sum 5.175 -9.940 1.155 11.266 Atomic orbital electron populations 1.70006 1.07012 1.27323 1.35403 1.25711 0.94617 1.00215 0.92652 0.86450 0.79848 0.81115 0.79439 1.19288 1.20546 1.19305 1.20879 0.93550 0.89186 1.54111 0.91472 1.17960 0.86641 0.81179 0.76201 1.90567 1.13708 1.85740 1.55434 1.48479 1.04693 1.04539 1.80277 1.21974 0.83871 0.94018 1.00494 1.22516 0.97228 0.96140 1.00546 1.22257 0.95687 0.94850 1.00201 0.90299 1.21398 0.96393 0.95651 1.00729 1.21546 0.95035 0.98624 1.00282 1.21573 0.97836 0.95378 1.00656 1.21520 0.98112 0.94785 1.00914 1.20917 0.93302 0.84599 0.96739 0.94152 0.92088 0.93021 0.92623 0.91262 0.91403 0.91906 0.92222 0.92404 0.92657 0.92387 0.92547 0.92493 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.25 11.83 55.55 0.66 -22.60 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.54 -15.59 9.09 -35.63 -0.32 -15.92 16 8 H 0.07 1.79 7.18 -52.49 -0.38 1.41 16 9 C 0.57 16.76 7.71 -12.99 -0.10 16.66 16 10 O -0.57 -18.53 13.16 5.20 0.07 -18.46 16 11 N -0.64 -15.23 3.28 -165.31 -0.54 -15.77 16 12 C 0.12 2.31 6.21 -1.86 -0.01 2.29 16 13 C -0.13 -1.87 6.55 -25.14 -0.16 -2.03 16 14 C -0.11 -1.74 2.64 -89.62 -0.24 -1.98 16 15 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 16 C -0.10 -1.33 5.61 -26.91 -0.15 -1.48 16 17 C -0.12 -1.50 5.84 -26.58 -0.16 -1.65 16 18 C -0.12 -1.76 5.84 -26.54 -0.16 -1.91 16 19 C -0.12 -2.30 5.04 -27.15 -0.14 -2.44 16 20 C 0.15 3.01 2.48 -68.15 -0.17 2.84 16 21 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 22 H 0.27 7.38 8.29 -40.82 -0.34 7.05 16 23 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 24 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.06 0.79 7.99 -51.93 -0.41 0.38 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 34 H 0.09 2.13 6.52 -51.93 -0.34 1.79 16 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -33.17 269.02 -7.81 -40.98 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.32 Total: -0.36 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.70 Total: -3.24 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.11 Total: -38.37 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.07 Total: -18.46 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.17 -7.81 -40.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134820746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.986 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds