Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48496 * 109.47092 * 239.99660 * 3 2 1 5 5 H 1.48495 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47023 * 119.99717 * 3 2 1 7 7 C 1.40049 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00776 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99517 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00021 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99813 * 180.02562 * 9 7 2 12 12 C 1.48214 * 126.44275 * 0.02562 * 11 9 7 13 13 C 1.55344 * 107.03239 * 174.93514 * 12 11 9 14 14 C 1.53666 * 101.77955 * 337.53018 * 13 12 11 15 15 H 1.08997 * 111.70778 * 281.24458 * 14 13 12 16 16 C 1.51935 * 115.22239 * 153.33798 * 14 13 12 17 17 C 1.53700 * 107.28735 * 185.16929 * 16 14 13 18 18 C 1.52577 * 111.49646 * 58.13035 * 17 16 14 19 19 C 1.53776 * 111.37205 * 305.14993 * 18 17 16 20 20 C 1.45390 * 126.43995 * 179.97438 * 11 9 7 21 21 H 1.08999 * 108.66248 * 94.37768 * 20 11 9 22 22 H 0.97001 * 119.99744 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.91454 * 294.27560 * 12 11 9 24 24 H 1.08996 * 109.92347 * 55.58401 * 12 11 9 25 25 H 1.08998 * 110.96184 * 219.40777 * 13 12 11 26 26 H 1.08998 * 110.96643 * 95.65973 * 13 12 11 27 27 H 1.09001 * 109.89147 * 304.61455 * 16 14 13 28 28 H 1.08993 * 109.88729 * 65.72188 * 16 14 13 29 29 H 1.09003 * 109.07132 * 297.61716 * 17 16 14 30 30 H 1.08998 * 109.01938 * 178.61967 * 17 16 14 31 31 H 1.09002 * 109.09821 * 184.66168 * 18 17 16 32 32 H 1.09002 * 109.09926 * 65.63848 * 18 17 16 33 33 H 1.08992 * 109.88126 * 297.81333 * 19 18 17 34 34 H 1.08998 * 109.93974 * 176.77006 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6964 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 3.4216 -3.8140 0.0033 13 6 3.7076 -5.3352 0.1351 14 6 2.4041 -5.8457 0.7689 15 1 2.3712 -5.6457 1.8398 16 6 2.0665 -7.2976 0.4748 17 6 0.6805 -7.5754 1.0782 18 6 -0.3775 -6.6380 0.5040 19 6 0.0257 -5.1643 0.6779 20 6 1.3677 -4.9804 0.0023 21 1 1.3010 -5.3323 -1.0272 22 1 -0.4850 0.8401 -0.0004 23 1 3.8390 -3.4372 -0.9305 24 1 3.8547 -3.2800 0.8491 25 1 4.5580 -5.5166 0.7924 26 1 3.8692 -5.7879 -0.8431 27 1 2.0417 -7.4617 -0.6025 28 1 2.8085 -7.9510 0.9334 29 1 0.7286 -7.4390 2.1586 30 1 0.3989 -8.6059 0.8617 31 1 -1.3238 -6.8118 1.0162 32 1 -0.5037 -6.8504 -0.5577 33 1 0.1092 -4.9255 1.7381 34 1 -0.7169 -4.5180 0.2100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134820746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -76.100845 kcal Electronic energy + Delta-G solvation = -15937.537158 eV Core-core repulsion = 13447.290928 eV Total energy + Delta-G solvation = -2490.246230 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14262 -38.37691 -36.08095 -34.68199 -32.79456 -30.66463 -29.21066 -28.10074 -24.04960 -23.62091 -21.87532 -21.17157 -20.61859 -18.35526 -17.49119 -16.59846 -16.10710 -15.88040 -15.46194 -15.05041 -14.69096 -14.38288 -14.09229 -13.60550 -13.53264 -13.06444 -12.92557 -12.70802 -12.62830 -12.54170 -12.11731 -12.07004 -11.98026 -11.62460 -11.40839 -11.26460 -10.94070 -10.82692 -9.68953 -9.02414 -8.29345 -6.86360 1.36321 1.40402 1.51972 2.22051 2.44589 2.86788 3.55482 3.62461 3.80615 3.87462 4.18661 4.21539 4.29399 4.44714 4.50517 4.57415 4.62117 4.70445 4.88735 4.97664 5.04178 5.08901 5.18016 5.26831 5.28057 5.30884 5.32964 5.41235 5.49642 5.60005 5.68486 6.06028 6.51798 6.85164 7.51989 8.47817 8.67186 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045775 B = 0.008138 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.541300 B = 3439.633294 C = 3957.763069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.570 4.570 8 H 0.082 0.918 9 C 0.552 3.448 10 O -0.622 6.622 11 N -0.653 5.653 12 C 0.109 3.891 13 C -0.109 4.109 14 C -0.096 4.096 15 H 0.070 0.930 16 C -0.098 4.098 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.112 4.112 20 C 0.132 3.868 21 H 0.037 0.963 22 H 0.274 0.726 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -12.534 1.373 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.607 4.607 8 H 0.100 0.900 9 C 0.359 3.641 10 O -0.509 6.509 11 N -0.390 5.390 12 C -0.014 4.014 13 C -0.147 4.147 14 C -0.115 4.115 15 H 0.089 0.911 16 C -0.135 4.135 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.150 4.150 20 C 0.027 3.973 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.243 -12.370 1.361 14.399 hybrid contribution -0.236 1.260 -0.070 1.283 sum 7.007 -11.110 1.291 13.199 Atomic orbital electron populations 1.70186 1.09498 1.28949 1.36550 1.26991 0.95553 1.04895 0.91207 0.85089 0.78270 0.74741 0.80304 1.17795 1.19666 1.17820 1.21388 0.94465 0.90040 1.54759 0.89954 1.18340 0.86438 0.83197 0.76145 1.90523 1.15727 1.87159 1.57503 1.48370 1.07149 1.04711 1.78733 1.22272 0.80843 0.97879 1.00369 1.22513 0.97695 0.92055 1.02403 1.22223 0.94263 0.96044 0.98980 0.91142 1.21422 0.97052 0.93476 1.01565 1.21545 0.94104 0.99282 1.00204 1.21525 0.99447 0.92249 1.01423 1.21413 0.97153 0.97563 0.98917 1.21240 0.94856 0.83786 0.97376 0.94541 0.91588 0.93032 0.92959 0.87757 0.89412 0.91206 0.88803 0.92161 0.89488 0.91542 0.92135 0.94455 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.97 11.83 21.84 0.26 -51.71 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 1.00 42.29 29.56 68.60 2.03 44.32 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.57 -33.94 9.09 24.83 0.23 -33.72 16 8 H 0.08 4.45 7.18 -2.91 -0.02 4.43 16 9 C 0.55 34.02 7.71 86.36 0.67 34.69 16 10 O -0.62 -43.28 13.16 -4.31 -0.06 -43.34 16 11 N -0.65 -32.03 3.28 -795.13 -2.61 -34.64 16 12 C 0.11 4.10 6.21 86.86 0.54 4.64 16 13 C -0.11 -2.85 6.55 31.62 0.21 -2.64 16 14 C -0.10 -2.79 2.64 -10.14 -0.03 -2.82 16 15 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 16 C -0.10 -2.08 5.61 30.48 0.17 -1.91 16 17 C -0.11 -2.53 5.84 30.69 0.18 -2.35 16 18 C -0.11 -3.21 5.84 30.72 0.18 -3.03 16 19 C -0.11 -4.72 5.04 30.32 0.15 -4.57 16 20 C 0.13 5.39 2.48 45.44 0.11 5.50 16 21 H 0.04 1.51 7.89 -2.39 -0.02 1.49 16 22 H 0.27 15.70 8.29 -92.71 -0.77 14.93 16 23 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16 27 H 0.07 1.45 7.99 -2.39 -0.02 1.43 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.64 8.12 -2.39 -0.02 1.63 16 34 H 0.04 1.89 6.52 -2.39 -0.02 1.88 16 Total: -1.00 -78.62 269.02 3.56 -75.06 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.06 Total: 14.39 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 2.88 Total: -4.09 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -2.35 Total: -86.35 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.06 Total: -43.34 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -78.62 3.56 -75.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134820746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.037 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds