Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86804 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47225 * 300.00215 * 3 2 1 6 6 H 1.48503 * 109.46833 * 59.99969 * 3 2 1 7 7 C 1.40048 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99879 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00093 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99911 * 180.02562 * 9 7 2 12 12 C 1.47653 * 127.19153 * 354.53100 * 11 9 7 13 13 C 1.53933 * 106.35416 * 149.39005 * 12 11 9 14 14 C 1.55007 * 105.42358 * 16.95998 * 13 12 11 15 15 H 1.08996 * 110.88160 * 122.50656 * 14 13 12 16 16 C 1.52944 * 107.14360 * 243.50207 * 14 13 12 17 17 C 1.52848 * 109.71657 * 166.70290 * 16 14 13 18 18 C 1.52759 * 108.41710 * 294.35756 * 17 16 14 19 19 C 1.51574 * 110.51945 * 61.15310 * 18 17 16 20 20 C 1.46371 * 127.19388 * 174.58470 * 11 9 7 21 21 H 1.08997 * 105.10662 * 100.86922 * 20 11 9 22 22 H 0.97009 * 119.99925 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.07850 * 30.16338 * 12 11 9 24 24 H 1.09005 * 110.12408 * 268.63566 * 12 11 9 25 25 H 1.09003 * 110.25508 * 257.96735 * 13 12 11 26 26 H 1.08996 * 110.32960 * 135.98735 * 13 12 11 27 27 H 1.08997 * 109.41441 * 286.75868 * 16 14 13 28 28 H 1.08994 * 109.42374 * 46.64167 * 16 14 13 29 29 H 1.08996 * 109.67350 * 54.14519 * 17 16 14 30 30 H 1.08995 * 109.66843 * 174.68256 * 17 16 14 31 31 H 1.09001 * 109.30769 * 300.86851 * 18 17 16 32 32 H 1.09003 * 109.22227 * 181.38845 * 18 17 16 33 33 H 1.09004 * 108.24466 * 192.98541 * 19 18 17 34 34 H 1.08992 * 108.09522 * 76.06831 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 3.4093 -3.8353 -0.1093 13 6 3.7433 -5.1136 0.6805 14 6 2.3926 -5.8529 0.8585 15 1 2.4419 -6.8582 0.4402 16 6 2.1006 -5.9034 2.3590 17 6 0.6470 -6.3167 2.5878 18 6 -0.2596 -5.2156 2.0409 19 6 -0.0383 -5.0358 0.5522 20 6 1.3860 -4.9943 0.1118 21 1 1.3755 -5.3820 -0.9068 22 1 -0.4850 0.8401 -0.0004 23 1 3.9302 -2.9811 0.3234 24 1 3.6936 -3.9563 -1.1547 25 1 4.1643 -4.8573 1.6528 26 1 4.4419 -5.7339 0.1191 27 1 2.7624 -6.6285 2.8327 28 1 2.2704 -4.9189 2.7946 29 1 0.4450 -7.2523 2.0664 30 1 0.4655 -6.4441 3.6550 31 1 -0.0384 -4.2791 2.5529 32 1 -1.3004 -5.4858 2.2196 33 1 -0.5176 -4.1059 0.2458 34 1 -0.5317 -5.8585 0.0348 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134820794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -44.271524 kcal Electronic energy + Delta-G solvation = -16170.531553 eV Core-core repulsion = 13681.665546 eV Total energy + Delta-G solvation = -2488.866007 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61053 -36.30295 -34.50372 -32.62132 -31.36228 -29.31310 -27.73891 -26.05012 -22.76798 -22.24581 -20.62888 -19.90399 -17.85875 -16.33673 -15.66640 -15.45296 -14.29496 -14.10362 -13.86513 -13.82030 -13.16788 -12.71062 -12.34687 -12.03384 -11.69943 -11.42784 -11.22233 -11.18277 -11.06103 -10.94213 -10.55275 -10.54245 -10.18462 -10.06441 -9.93509 -9.58860 -9.46081 -8.86529 -7.31065 -7.10641 -6.16605 -4.64783 3.11903 3.20419 3.24649 4.08426 4.52055 4.62733 5.03700 5.10490 5.21629 5.48910 5.58445 5.65346 5.79014 5.87871 5.95745 5.98351 6.02688 6.15123 6.23199 6.30918 6.34866 6.49499 6.57175 6.59133 6.72926 6.79167 6.86475 7.07619 7.30170 7.43416 7.59291 8.20588 8.47821 9.02083 9.54770 10.56900 10.76640 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.009286 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.734746 B = 3014.447017 C = 3413.303175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.579 3.421 10 O -0.566 6.566 11 N -0.637 5.637 12 C 0.115 3.885 13 C -0.133 4.133 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.104 4.104 19 C -0.162 4.162 20 C 0.163 3.837 21 H 0.021 0.979 22 H 0.268 0.732 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.139 0.861 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -8.840 2.754 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.387 3.613 10 O -0.450 6.450 11 N -0.375 5.375 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.114 4.114 15 H 0.093 0.907 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.142 4.142 19 C -0.198 4.198 20 C 0.058 3.942 21 H 0.039 0.961 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.583 -8.620 2.725 10.135 hybrid contribution 0.674 0.637 -0.045 0.929 sum 5.257 -7.983 2.680 9.927 Atomic orbital electron populations 1.70021 1.06990 1.27200 1.35318 1.25712 0.94629 1.00244 0.92615 0.86335 0.80535 0.81806 0.78229 1.18781 1.20139 1.20157 1.20947 0.93658 0.89093 1.53893 0.91264 1.17919 0.86467 0.81018 0.75946 1.90325 1.13810 1.84709 1.56110 1.48499 1.05260 1.04831 1.78916 1.21710 0.84483 0.96673 0.98103 1.22727 0.96736 0.96985 1.00653 1.21761 0.95246 0.98268 0.96123 0.90697 1.21558 0.96125 1.01259 0.95479 1.21484 0.95728 0.98714 0.99705 1.21027 0.97999 0.98230 0.96918 1.21282 0.96089 1.06843 0.95610 1.19687 0.92991 0.84588 0.96940 0.96118 0.92137 0.91075 0.93735 0.91413 0.91783 0.92899 0.91740 0.92599 0.92832 0.92247 0.93027 0.84434 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.69 11.83 55.55 0.66 -22.04 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -15.21 9.06 -35.63 -0.32 -15.54 16 8 H 0.07 1.82 6.52 -52.49 -0.34 1.48 16 9 C 0.58 16.48 7.71 -12.99 -0.10 16.38 16 10 O -0.57 -17.72 12.19 5.20 0.06 -17.66 16 11 N -0.64 -14.89 3.33 -169.17 -0.56 -15.46 16 12 C 0.12 2.19 6.79 -2.92 -0.02 2.17 16 13 C -0.13 -2.01 6.53 -25.18 -0.16 -2.18 16 14 C -0.09 -1.51 3.33 -90.13 -0.30 -1.81 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 16 C -0.11 -1.62 4.89 -26.84 -0.13 -1.75 16 17 C -0.12 -1.78 5.94 -26.93 -0.16 -1.94 16 18 C -0.10 -1.92 5.94 -27.58 -0.16 -2.08 16 19 C -0.16 -3.35 5.23 -29.35 -0.15 -3.50 16 20 C 0.16 3.30 2.74 -70.44 -0.19 3.11 16 21 H 0.02 0.42 8.05 -51.93 -0.42 0.01 16 22 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 23 H 0.07 1.37 6.78 -51.93 -0.35 1.02 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.98 7.46 -51.93 -0.39 0.59 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.14 3.53 4.41 -52.89 -0.23 3.30 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -31.77 264.55 -7.77 -39.53 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.08 Total: 1.37 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.80 Total: -4.82 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.09 Total: -37.49 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.06 Total: -17.66 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.77 -7.77 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134820794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.740 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds