Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86804 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47225 * 300.00215 * 3 2 1 6 6 H 1.48503 * 109.46833 * 59.99969 * 3 2 1 7 7 C 1.40048 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99879 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00093 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99911 * 180.02562 * 9 7 2 12 12 C 1.47653 * 127.19153 * 354.53100 * 11 9 7 13 13 C 1.53933 * 106.35416 * 149.39005 * 12 11 9 14 14 C 1.55007 * 105.42358 * 16.95998 * 13 12 11 15 15 H 1.08996 * 110.88160 * 122.50656 * 14 13 12 16 16 C 1.52944 * 107.14360 * 243.50207 * 14 13 12 17 17 C 1.52848 * 109.71657 * 166.70290 * 16 14 13 18 18 C 1.52759 * 108.41710 * 294.35756 * 17 16 14 19 19 C 1.51574 * 110.51945 * 61.15310 * 18 17 16 20 20 C 1.46371 * 127.19388 * 174.58470 * 11 9 7 21 21 H 1.08997 * 105.10662 * 100.86922 * 20 11 9 22 22 H 0.97009 * 119.99925 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.07850 * 30.16338 * 12 11 9 24 24 H 1.09005 * 110.12408 * 268.63566 * 12 11 9 25 25 H 1.09003 * 110.25508 * 257.96735 * 13 12 11 26 26 H 1.08996 * 110.32960 * 135.98735 * 13 12 11 27 27 H 1.08997 * 109.41441 * 286.75868 * 16 14 13 28 28 H 1.08994 * 109.42374 * 46.64167 * 16 14 13 29 29 H 1.08996 * 109.67350 * 54.14519 * 17 16 14 30 30 H 1.08995 * 109.66843 * 174.68256 * 17 16 14 31 31 H 1.09001 * 109.30769 * 300.86851 * 18 17 16 32 32 H 1.09003 * 109.22227 * 181.38845 * 18 17 16 33 33 H 1.09004 * 108.24466 * 192.98541 * 19 18 17 34 34 H 1.08992 * 108.09522 * 76.06831 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 3.4093 -3.8353 -0.1093 13 6 3.7433 -5.1136 0.6805 14 6 2.3926 -5.8529 0.8585 15 1 2.4419 -6.8582 0.4402 16 6 2.1006 -5.9034 2.3590 17 6 0.6470 -6.3167 2.5878 18 6 -0.2596 -5.2156 2.0409 19 6 -0.0383 -5.0358 0.5522 20 6 1.3860 -4.9943 0.1118 21 1 1.3755 -5.3820 -0.9068 22 1 -0.4850 0.8401 -0.0004 23 1 3.9302 -2.9811 0.3234 24 1 3.6936 -3.9563 -1.1547 25 1 4.1643 -4.8573 1.6528 26 1 4.4419 -5.7339 0.1191 27 1 2.7624 -6.6285 2.8327 28 1 2.2704 -4.9189 2.7946 29 1 0.4450 -7.2523 2.0664 30 1 0.4655 -6.4441 3.6550 31 1 -0.0384 -4.2791 2.5529 32 1 -1.3004 -5.4858 2.2196 33 1 -0.5176 -4.1059 0.2458 34 1 -0.5317 -5.8585 0.0348 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134820794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -65.080022 kcal Electronic energy + Delta-G solvation = -16171.433877 eV Core-core repulsion = 13681.665546 eV Total energy + Delta-G solvation = -2489.768331 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18774 -38.24737 -36.06432 -34.71247 -32.96359 -30.93626 -29.20183 -28.09846 -24.42314 -23.67745 -22.01815 -21.65379 -19.49659 -18.31072 -17.43881 -17.11324 -16.07652 -15.81296 -15.30806 -15.26891 -14.74690 -14.31909 -14.06125 -13.73604 -13.31340 -13.08492 -12.84074 -12.81615 -12.64854 -12.55018 -12.29456 -11.98631 -11.94472 -11.62082 -11.41208 -11.01556 -10.94678 -10.81153 -9.37805 -9.00303 -8.25043 -6.84429 1.37216 1.37365 1.54955 2.22158 2.44667 2.90172 3.52892 3.73151 3.86212 3.86805 4.15606 4.24027 4.34889 4.51550 4.56088 4.60010 4.65292 4.81549 4.87771 5.00039 5.04540 5.06592 5.18368 5.22096 5.32030 5.36709 5.40208 5.45082 5.59723 5.68774 5.75412 6.16358 6.54377 6.87322 7.55847 8.48694 8.68262 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.009286 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.734746 B = 3014.447017 C = 3413.303175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.994 3.006 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.559 3.441 10 O -0.611 6.611 11 N -0.648 5.648 12 C 0.105 3.895 13 C -0.120 4.120 14 C -0.088 4.088 15 H 0.110 0.890 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.101 4.101 19 C -0.161 4.161 20 C 0.152 3.848 21 H 0.015 0.985 22 H 0.274 0.726 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -10.447 3.370 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.604 4.604 8 H 0.100 0.900 9 C 0.366 3.634 10 O -0.498 6.498 11 N -0.384 5.384 12 C -0.019 4.019 13 C -0.158 4.158 14 C -0.107 4.107 15 H 0.128 0.872 16 C -0.142 4.142 17 C -0.148 4.148 18 C -0.139 4.139 19 C -0.198 4.198 20 C 0.048 3.952 21 H 0.033 0.967 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.104 -10.276 3.341 12.932 hybrid contribution -0.151 1.069 -0.282 1.115 sum 6.953 -9.208 3.059 11.936 Atomic orbital electron populations 1.70186 1.09359 1.28782 1.36598 1.26935 0.95540 1.04732 0.91291 0.85023 0.79354 0.75639 0.78612 1.17151 1.19222 1.19288 1.21430 0.94462 0.89999 1.54547 0.89981 1.18250 0.86328 0.82890 0.75932 1.90327 1.15601 1.86147 1.57742 1.48403 1.07492 1.04912 1.77633 1.21997 0.81671 0.98716 0.99487 1.22706 0.96990 0.95028 1.01057 1.21799 0.93759 0.98870 0.96303 0.87184 1.21572 0.96965 1.00819 0.94890 1.21455 0.94577 0.97769 1.00980 1.20988 0.99819 0.98028 0.95055 1.21125 0.96636 1.04622 0.97446 1.19988 0.93813 0.83736 0.97678 0.96670 0.91621 0.92052 0.92804 0.90408 0.87981 0.88999 0.94649 0.90202 0.90876 0.96327 0.92064 0.89799 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.82 11.83 21.84 0.26 -50.56 16 2 C 0.03 1.71 5.50 85.30 0.47 2.18 16 3 Si 0.99 41.85 29.56 68.60 2.03 43.88 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.57 -33.15 9.06 24.83 0.22 -32.93 16 8 H 0.08 4.39 6.52 -2.91 -0.02 4.37 16 9 C 0.56 33.51 7.71 86.36 0.67 34.18 16 10 O -0.61 -41.04 12.19 -4.31 -0.05 -41.09 16 11 N -0.65 -31.05 3.33 -807.34 -2.68 -33.73 16 12 C 0.10 3.88 6.79 86.47 0.59 4.47 16 13 C -0.12 -3.21 6.53 31.60 0.21 -3.00 16 14 C -0.09 -2.52 3.33 -10.48 -0.03 -2.56 16 15 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 16 C -0.11 -2.84 4.89 30.52 0.15 -2.69 16 17 C -0.11 -3.00 5.94 30.46 0.18 -2.82 16 18 C -0.10 -3.77 5.94 30.05 0.18 -3.59 16 19 C -0.16 -6.87 5.23 28.90 0.15 -6.71 16 20 C 0.15 6.13 2.74 43.43 0.12 6.25 16 21 H 0.02 0.62 8.05 -2.39 -0.02 0.60 16 22 H 0.27 15.35 8.29 -92.70 -0.77 14.58 16 23 H 0.06 2.35 6.78 -2.39 -0.02 2.33 16 24 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.08 1.96 7.46 -2.39 -0.02 1.94 16 26 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.03 1.16 7.88 -2.39 -0.02 1.14 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 4.63 4.41 -17.63 -0.08 4.56 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.18 264.55 3.45 -71.72 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.01 Total: 17.02 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 2.90 Total: -7.23 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.43 Total: -84.29 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.05 Total: -41.09 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -75.18 3.45 -71.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134820794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.641 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds