Wall clock time and date at job start Mon Mar 30 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47307 * 2 1 4 4 C 1.34517 * 125.78987 * 89.99937 * 3 2 1 5 5 C 1.41378 * 106.83959 * 179.97438 * 4 3 2 6 6 C 1.34509 * 106.84065 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.79055 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47250 * 89.99782 * 7 6 5 9 9 C 1.46899 * 111.00133 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47162 * 35.00052 * 9 8 7 11 11 C 1.53006 * 109.47163 * 275.00091 * 9 8 7 12 12 C 1.50699 * 109.47244 * 155.00305 * 9 8 7 13 13 H 1.08003 * 120.00271 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00268 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46809 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46948 * 120.00386 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00673 * 16 14 12 20 20 O 1.34298 * 125.78895 * 270.26308 * 3 2 1 21 21 H 1.08993 * 109.47402 * 300.00384 * 1 2 3 22 22 H 1.09003 * 109.46796 * 60.00269 * 1 2 3 23 23 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47143 * 239.99751 * 2 1 3 25 25 H 1.09003 * 109.46796 * 119.99731 * 2 1 3 26 26 H 1.07999 * 126.57731 * 359.93952 * 4 3 2 27 27 H 1.07996 * 126.57849 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.46812 * 330.00255 * 7 6 5 29 29 H 1.08993 * 109.47302 * 210.00220 * 7 6 5 30 30 H 1.00901 * 111.00183 * 303.95887 * 8 7 6 31 31 H 1.09001 * 109.47002 * 59.99764 * 11 9 8 32 32 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47050 * 300.00030 * 11 9 8 34 34 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1625 1.0912 5 6 2.7410 3.4230 0.6320 6 6 2.7253 3.3760 -0.7121 7 6 3.1231 4.4966 -1.6379 8 7 4.5578 4.3983 -1.9377 9 6 4.9825 5.4775 -2.8392 10 1 4.4209 6.3835 -2.6113 11 6 4.7183 5.0649 -4.2887 12 6 6.4548 5.7386 -2.6517 13 1 7.0188 5.1603 -1.9348 14 6 7.0821 6.7150 -3.3961 15 7 6.3955 7.4188 -4.2694 16 14 8.9070 7.0391 -3.1632 17 1 9.4448 6.1199 -2.1283 18 1 9.6183 6.8095 -4.4465 19 1 9.1088 8.4451 -2.7301 20 8 2.2895 2.1629 -1.0894 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1847 1.8544 2.1204 27 1 3.0375 4.2624 1.2433 28 1 2.9168 5.4539 -1.1591 29 1 2.5526 4.4230 -2.5637 30 1 5.1052 4.3991 -1.0901 31 1 3.6533 4.8760 -4.4244 32 1 5.0338 5.8655 -4.9576 33 1 5.2798 4.1589 -4.5167 34 1 6.8368 8.1061 -4.7929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134972138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:13 Heat of formation + Delta-G solvation = 0.137856 kcal Electronic energy + Delta-G solvation = -14836.733801 eV Core-core repulsion = 12349.793529 eV Total energy + Delta-G solvation = -2486.940272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.28315 -36.08444 -34.18265 -33.00885 -32.19219 -29.84312 -27.49092 -25.40673 -24.51941 -22.61459 -21.34149 -19.88245 -19.75378 -16.97520 -16.04504 -15.78655 -14.91623 -14.54033 -14.46976 -13.74131 -13.47500 -13.12884 -13.01958 -12.52962 -12.41551 -12.22876 -11.70876 -11.55155 -11.19338 -11.05599 -10.83512 -10.74041 -10.34604 -10.14851 -10.04430 -9.59285 -8.86578 -8.51089 -8.03678 -7.35066 -6.04860 -4.11430 1.99588 2.86802 3.18117 3.28213 3.36111 3.40785 4.39331 4.72054 4.93031 5.12525 5.18953 5.26457 5.30129 5.42319 5.53318 5.65671 5.72068 5.84213 5.99742 6.04638 6.09914 6.26898 6.44647 6.79229 6.86367 7.11586 7.18588 7.44456 7.51165 7.75924 7.85388 8.23851 8.32268 8.59995 8.98071 9.54628 11.01537 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055418 B = 0.005067 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.128274 B = 5524.736828 C = 5707.966635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.025 4.025 4 C -0.208 4.208 5 C -0.220 4.220 6 C 0.018 3.982 7 C 0.133 3.867 8 N -0.684 5.684 9 C 0.211 3.789 10 H 0.004 0.996 11 C -0.126 4.126 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 O -0.166 6.166 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.335 0.665 31 H 0.005 0.995 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 -10.122 8.296 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.228 4.228 5 C -0.240 4.240 6 C -0.033 4.033 7 C 0.003 3.997 8 N -0.316 5.316 9 C 0.104 3.896 10 H 0.022 0.978 11 C -0.184 4.184 12 C -0.557 4.557 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.211 1.211 20 O -0.062 6.062 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.723 -10.512 7.332 16.087 hybrid contribution 1.037 1.093 0.904 1.757 sum -8.686 -9.419 8.236 15.232 Atomic orbital electron populations 1.21788 0.94302 1.01950 1.02609 1.20014 0.96059 0.87922 1.03811 1.22324 1.05602 0.95110 0.84531 1.21446 1.07736 0.94668 0.98920 1.21534 1.08911 0.99478 0.94054 1.22698 1.00767 0.85417 0.94413 1.20413 0.93192 0.89763 0.96283 1.60782 0.99724 1.51640 1.19454 1.19165 0.95088 0.86084 0.89282 0.97841 1.21733 0.95823 1.01169 0.99688 1.21277 0.93705 1.18393 1.22320 0.92070 1.24917 0.98384 0.95695 0.94981 1.69904 1.35791 1.22745 1.24393 0.86444 0.84998 0.77920 0.78069 1.19720 1.20934 1.21059 1.83989 1.64808 1.22680 1.34756 0.92319 0.92276 0.91913 0.90198 0.89244 0.84088 0.83841 0.92819 0.90089 0.84750 0.97610 0.89940 0.94850 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 37.16 0.37 -0.94 16 2 C -0.04 -0.42 6.47 -27.88 -0.18 -0.60 16 3 C -0.03 -0.37 6.58 -35.62 -0.23 -0.60 16 4 C -0.21 -2.96 10.81 -39.70 -0.43 -3.39 16 5 C -0.22 -3.49 10.81 -39.71 -0.43 -3.92 16 6 C 0.02 0.32 6.83 -35.62 -0.24 0.08 16 7 C 0.13 2.52 6.01 -4.98 -0.03 2.49 16 8 N -0.68 -15.16 6.29 -109.22 -0.69 -15.84 16 9 C 0.21 5.39 2.60 -68.86 -0.18 5.21 16 10 H 0.00 0.11 7.80 -51.93 -0.40 -0.30 16 11 C -0.13 -3.18 9.19 37.16 0.34 -2.84 16 12 C -0.52 -14.30 8.59 -34.44 -0.30 -14.60 16 13 H 0.06 1.67 7.62 -52.48 -0.40 1.27 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 O -0.17 -2.94 10.65 5.73 0.06 -2.88 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 29 H 0.08 1.54 7.44 -51.93 -0.39 1.16 16 30 H 0.33 7.28 8.21 -39.29 -0.32 6.96 16 31 H 0.00 0.11 7.45 -51.93 -0.39 -0.27 16 32 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -29.50 288.13 -7.24 -36.74 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.15 Total: 3.63 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.41 Total: -17.50 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.06 Total: -40.59 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: 0.06 Total: -2.88 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.50 -7.24 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134972138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.874 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds