Wall clock time and date at job start Mon Mar 30 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47307 * 2 1 4 4 C 1.34517 * 125.78987 * 89.99937 * 3 2 1 5 5 C 1.41378 * 106.83959 * 179.97438 * 4 3 2 6 6 C 1.34509 * 106.84065 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.79055 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47250 * 89.99782 * 7 6 5 9 9 C 1.46899 * 111.00133 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47162 * 35.00052 * 9 8 7 11 11 C 1.53006 * 109.47163 * 275.00091 * 9 8 7 12 12 C 1.50699 * 109.47244 * 155.00305 * 9 8 7 13 13 H 1.08003 * 120.00271 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00268 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46809 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46948 * 120.00386 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00673 * 16 14 12 20 20 O 1.34298 * 125.78895 * 270.26308 * 3 2 1 21 21 H 1.08993 * 109.47402 * 300.00384 * 1 2 3 22 22 H 1.09003 * 109.46796 * 60.00269 * 1 2 3 23 23 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47143 * 239.99751 * 2 1 3 25 25 H 1.09003 * 109.46796 * 119.99731 * 2 1 3 26 26 H 1.07999 * 126.57731 * 359.93952 * 4 3 2 27 27 H 1.07996 * 126.57849 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.46812 * 330.00255 * 7 6 5 29 29 H 1.08993 * 109.47302 * 210.00220 * 7 6 5 30 30 H 1.00901 * 111.00183 * 303.95887 * 8 7 6 31 31 H 1.09001 * 109.47002 * 59.99764 * 11 9 8 32 32 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47050 * 300.00030 * 11 9 8 34 34 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1625 1.0912 5 6 2.7410 3.4230 0.6320 6 6 2.7253 3.3760 -0.7121 7 6 3.1231 4.4966 -1.6379 8 7 4.5578 4.3983 -1.9377 9 6 4.9825 5.4775 -2.8392 10 1 4.4209 6.3835 -2.6113 11 6 4.7183 5.0649 -4.2887 12 6 6.4548 5.7386 -2.6517 13 1 7.0188 5.1603 -1.9348 14 6 7.0821 6.7150 -3.3961 15 7 6.3955 7.4188 -4.2694 16 14 8.9070 7.0391 -3.1632 17 1 9.4448 6.1199 -2.1283 18 1 9.6183 6.8095 -4.4465 19 1 9.1088 8.4451 -2.7301 20 8 2.2895 2.1629 -1.0894 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1847 1.8544 2.1204 27 1 3.0375 4.2624 1.2433 28 1 2.9168 5.4539 -1.1591 29 1 2.5526 4.4230 -2.5637 30 1 5.1052 4.3991 -1.0901 31 1 3.6533 4.8760 -4.4244 32 1 5.0338 5.8655 -4.9576 33 1 5.2798 4.1589 -4.5167 34 1 6.8368 8.1061 -4.7929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134972138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:13 Heat of formation + Delta-G solvation = -17.940466 kcal Electronic energy + Delta-G solvation = -14837.517736 eV Core-core repulsion = 12349.793529 eV Total energy + Delta-G solvation = -2487.724207 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.50420 -37.90547 -35.20984 -34.70374 -33.60428 -31.48863 -28.99497 -27.39567 -25.94878 -23.70028 -22.56641 -21.81150 -20.99549 -18.79755 -17.46953 -17.19883 -16.68126 -16.04373 -15.55270 -15.32709 -14.96387 -14.75942 -14.05362 -13.89149 -13.69797 -13.53661 -13.24484 -12.95852 -12.72533 -12.56248 -12.41102 -12.28230 -12.21759 -11.97670 -11.82551 -10.94187 -10.79603 -10.60118 -9.33278 -9.09047 -8.15144 -6.29605 0.77048 1.41604 1.43533 1.55434 1.68841 2.01370 2.41438 3.13673 3.58615 3.76637 4.03638 4.15440 4.21301 4.39404 4.40289 4.51836 4.63505 4.78104 4.89865 4.94123 5.02840 5.04597 5.15062 5.18320 5.23150 5.36039 5.41627 5.63591 5.68624 5.80401 6.17719 6.29380 6.38936 6.67606 6.92414 7.40689 8.90842 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055418 B = 0.005067 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.128274 B = 5524.736828 C = 5707.966635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.025 4.025 4 C -0.215 4.215 5 C -0.212 4.212 6 C -0.017 4.017 7 C 0.139 3.861 8 N -0.685 5.685 9 C 0.214 3.786 10 H -0.020 1.020 11 C -0.115 4.115 12 C -0.539 4.539 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.278 1.278 20 O -0.191 6.191 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.172 0.828 27 H 0.156 0.844 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.336 0.664 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -11.371 9.762 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.075 4.075 4 C -0.234 4.234 5 C -0.232 4.232 6 C -0.067 4.067 7 C 0.010 3.990 8 N -0.317 5.317 9 C 0.107 3.893 10 H -0.003 1.003 11 C -0.174 4.174 12 C -0.577 4.577 13 H 0.077 0.923 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.204 1.204 20 O -0.088 6.088 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.134 0.866 26 H 0.190 0.810 27 H 0.174 0.826 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.721 -11.770 8.810 17.625 hybrid contribution 0.948 1.412 0.491 1.771 sum -8.772 -10.357 9.301 16.454 Atomic orbital electron populations 1.21772 0.93080 1.03407 1.02020 1.20276 0.97012 0.85449 1.05187 1.23250 1.04021 0.96387 0.83835 1.21814 1.07450 0.93753 1.00394 1.21841 1.07313 1.00597 0.93464 1.22413 1.03810 0.85740 0.94774 1.20275 0.90999 0.91132 0.96609 1.60676 1.01712 1.50027 1.19310 1.18979 0.94170 0.86104 0.90086 1.00272 1.21572 0.96718 0.99842 0.99227 1.21568 0.94802 1.18788 1.22571 0.92319 1.25725 1.02764 0.95387 0.94586 1.70019 1.37533 1.23086 1.24932 0.85404 0.79605 0.77922 0.78062 1.19178 1.20565 1.20396 1.83960 1.65410 1.22961 1.36462 0.91972 0.93816 0.89450 0.90094 0.86561 0.81024 0.82601 0.92133 0.90775 0.84632 0.95908 0.92032 0.95529 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.90 71.98 0.71 -1.47 16 2 C -0.04 -0.76 6.47 29.85 0.19 -0.56 16 3 C -0.02 -0.68 6.58 24.83 0.16 -0.51 16 4 C -0.22 -5.61 10.81 22.19 0.24 -5.37 16 5 C -0.21 -6.46 10.81 22.19 0.24 -6.22 16 6 C -0.02 -0.61 6.83 24.83 0.17 -0.44 16 7 C 0.14 5.34 6.01 85.56 0.51 5.85 16 8 N -0.69 -30.75 6.29 -499.46 -3.14 -33.90 16 9 C 0.21 11.18 2.60 44.17 0.11 11.29 16 10 H -0.02 -1.13 7.80 -2.39 -0.02 -1.15 16 11 C -0.12 -5.92 9.19 71.98 0.66 -5.26 16 12 C -0.54 -30.01 8.59 25.60 0.22 -29.79 16 13 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 14 C 0.01 0.82 5.30 84.66 0.45 1.27 16 15 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 16 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 O -0.19 -6.68 10.65 -2.42 -0.03 -6.70 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 29 H 0.07 2.89 7.44 -2.39 -0.02 2.88 16 30 H 0.34 14.75 8.21 -89.69 -0.74 14.01 16 31 H 0.02 1.04 7.45 -2.39 -0.02 1.02 16 32 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -62.85 288.13 3.12 -59.73 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.34 Total: 19.04 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.68 Total: -31.22 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.90 Total: -86.46 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.03 Total: -6.70 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.85 3.12 -59.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134972138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.791 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds