Wall clock time and date at job start Mon Mar 30 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00021 * 2 1 4 4 C 1.52995 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.36644 * 124.78928 * 90.02396 * 5 4 3 7 7 C 1.50697 * 125.30926 * 359.97438 * 6 5 4 8 8 C 1.34333 * 109.39054 * 180.02562 * 6 5 4 9 9 C 1.46969 * 106.48310 * 359.97438 * 8 6 5 10 10 C 1.41355 * 127.10667 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99388 * 180.30347 * 10 9 8 12 12 C 1.39675 * 119.99922 * 0.02562 * 10 9 8 13 13 N 1.31052 * 120.00031 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99618 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47093 * 60.00332 * 14 12 10 16 16 H 1.48495 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00052 * 14 12 10 18 18 C 1.34913 * 124.78964 * 270.34044 * 5 4 3 19 19 C 1.50698 * 126.04125 * 0.02562 * 18 5 4 20 20 H 1.09006 * 109.47472 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47071 * 299.99663 * 1 2 3 22 22 H 1.08997 * 109.47355 * 59.99596 * 1 2 3 23 23 H 1.09001 * 109.47433 * 60.00127 * 3 2 1 24 24 H 1.09002 * 109.47338 * 300.00425 * 3 2 1 25 25 H 1.09001 * 109.47329 * 60.00402 * 4 3 2 26 26 H 1.09002 * 109.47333 * 299.99747 * 4 3 2 27 27 H 1.08995 * 109.47643 * 270.00749 * 7 6 5 28 28 H 1.09006 * 109.46976 * 30.00563 * 7 6 5 29 29 H 1.09000 * 109.47561 * 150.00194 * 7 6 5 30 30 H 1.07994 * 126.75281 * 179.97438 * 8 6 5 31 31 H 0.97000 * 119.99473 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47073 * 270.21953 * 19 18 5 33 33 H 1.09005 * 109.46921 * 30.21970 * 19 18 5 34 34 H 1.08998 * 109.47449 * 150.21993 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.4493 3.2343 1.1225 7 6 4.2412 2.7648 2.5393 8 6 4.9753 4.4179 0.7663 9 6 4.9857 4.4444 -0.7031 10 6 5.4503 5.4894 -1.5339 11 1 5.3990 5.3886 -2.6080 12 6 5.9702 6.6547 -0.9657 13 7 6.0278 6.7789 0.3376 14 14 6.5847 8.0353 -2.0638 15 1 5.4721 8.5193 -2.9200 16 1 7.0839 9.1522 -1.2221 17 1 7.6870 7.5319 -2.9221 18 6 4.4380 3.2295 -1.1077 19 6 4.2280 2.7820 -2.5312 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.8567 0.6439 -0.8909 26 1 3.8574 0.6435 0.8891 27 1 3.2524 3.0697 2.8816 28 1 4.3196 1.6782 2.5771 29 1 5.0011 3.2065 3.1838 30 1 5.3222 5.1966 1.4293 31 1 6.3885 7.5883 0.7321 32 1 5.1145 2.2524 -2.8802 33 1 3.3651 2.1177 -2.5797 34 1 4.0524 3.6523 -3.1636 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161237984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:32 Heat of formation + Delta-G solvation = -30.888486 kcal Electronic energy + Delta-G solvation = -15349.402074 eV Core-core repulsion = 12861.116399 eV Total energy + Delta-G solvation = -2488.285675 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31006 -38.83373 -35.54106 -33.51951 -33.06369 -29.87112 -29.56198 -27.81608 -26.58099 -24.22662 -23.58920 -21.05034 -19.36220 -18.15142 -17.45718 -16.99851 -16.46866 -16.41138 -15.96337 -14.95385 -14.89420 -14.39393 -13.90803 -13.88345 -13.62268 -13.26957 -12.95140 -12.90571 -12.87567 -12.58823 -12.38665 -12.33826 -12.28441 -12.01951 -11.64367 -11.13065 -11.03541 -10.73421 -8.89557 -8.29809 -8.23150 -5.86560 1.37414 1.42038 1.53299 1.79524 2.28114 2.37204 2.51584 3.15559 3.69528 3.80720 4.03677 4.26658 4.37827 4.45469 4.52324 4.57005 4.59005 4.68205 4.72061 4.76257 4.80847 4.90122 4.98187 5.14612 5.24760 5.43082 5.56668 5.95762 6.06639 6.08076 6.41665 6.68243 7.06386 7.24018 7.38574 7.45121 8.73348 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.007014 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.826142 B = 3991.249712 C = 4416.348567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.116 3.884 5 N -0.445 5.445 6 C -0.020 4.020 7 C -0.064 4.064 8 C -0.236 4.236 9 C -0.008 4.008 10 C -0.473 4.473 11 H 0.061 0.939 12 C 0.019 3.981 13 N -0.859 5.859 14 Si 0.978 3.022 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.266 1.266 18 C -0.157 4.157 19 C -0.035 4.035 20 H 0.108 0.892 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.271 0.729 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 -9.537 0.867 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.017 4.017 4 C -0.007 4.007 5 N -0.128 5.128 6 C -0.130 4.130 7 C -0.122 4.122 8 C -0.264 4.264 9 C -0.014 4.014 10 C -0.507 4.507 11 H 0.080 0.920 12 C -0.189 4.189 13 N -0.490 5.490 14 Si 0.801 3.199 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.191 1.191 18 C -0.264 4.264 19 C -0.093 4.093 20 H 0.127 0.873 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.637 -9.882 0.998 12.529 hybrid contribution 0.200 1.217 -0.404 1.298 sum -7.438 -8.664 0.595 11.435 Atomic orbital electron populations 1.22977 0.79053 1.04260 1.00745 1.87756 1.21836 1.27114 1.95599 1.22700 0.93695 0.84771 1.00538 1.21316 0.91715 0.82999 1.04661 1.42743 1.51596 1.13906 1.04506 1.20511 1.09001 0.94265 0.89204 1.20187 1.02075 1.00883 0.89019 1.22364 1.10765 0.97541 0.95759 1.18770 0.97600 0.92374 0.92682 1.18968 1.38192 1.00235 0.93283 0.92048 1.26523 0.94695 1.01180 0.96481 1.69923 1.39629 1.27438 1.12060 0.85320 0.78927 0.77192 0.78444 1.19054 1.19880 1.19089 1.20474 1.21024 0.96173 0.88702 1.19713 0.99796 0.99763 0.90032 0.87340 0.93328 0.93620 0.93152 0.93748 0.89376 0.88523 0.91446 0.90970 0.91035 0.85197 0.91894 0.93450 0.92400 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -10.73 10.70 -148.98 -1.59 -12.32 16 3 C 0.06 1.82 6.26 71.98 0.45 2.27 16 4 C 0.12 3.82 5.74 86.38 0.50 4.31 16 5 N -0.44 -19.35 2.70 -493.00 -1.33 -20.68 16 6 C -0.02 -0.94 6.83 40.92 0.28 -0.66 16 7 C -0.06 -2.19 10.04 71.24 0.72 -1.47 16 8 C -0.24 -13.22 9.76 23.67 0.23 -12.99 16 9 C -0.01 -0.46 6.10 -19.97 -0.12 -0.59 16 10 C -0.47 -27.89 9.12 23.38 0.21 -27.68 16 11 H 0.06 3.48 7.36 -2.91 -0.02 3.46 16 12 C 0.02 1.07 5.49 85.16 0.47 1.53 16 13 N -0.86 -49.56 10.42 21.79 0.23 -49.33 16 14 Si 0.98 42.76 29.56 68.60 2.03 44.79 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 C -0.16 -7.81 6.99 42.33 0.30 -7.51 16 19 C -0.04 -1.45 9.62 71.24 0.69 -0.76 16 20 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 25 H 0.09 2.78 7.53 -2.39 -0.02 2.76 16 26 H 0.10 2.84 6.87 -2.39 -0.02 2.82 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.07 6.91 -2.38 -0.02 2.05 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.13 7.74 6.02 -2.91 -0.02 7.72 16 31 H 0.27 14.41 8.30 -92.71 -0.77 13.64 16 32 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.06 2.01 7.61 -2.38 -0.02 2.00 16 34 H 0.05 2.25 7.59 -2.39 -0.02 2.23 16 Total: -1.00 -67.63 284.99 5.36 -62.27 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.07 Total: 17.09 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 4.96 Total: -41.82 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -1.10 Total: -70.01 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.59 Total: -12.32 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.63 5.36 -62.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161237984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds