Wall clock time and date at job start Mon Mar 30 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99850 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00466 * 179.97438 * 12 11 10 15 15 C 1.52992 * 117.46468 * 179.97438 * 14 12 11 16 16 H 1.09002 * 119.29740 * 356.29549 * 15 14 12 17 17 C 1.54264 * 118.20116 * 202.15054 * 15 14 12 18 18 C 1.54893 * 104.19433 * 272.21148 * 17 15 14 19 19 C 1.54891 * 102.74847 * 37.94386 * 18 17 15 20 20 C 1.52991 * 117.46397 * 249.04357 * 14 12 11 21 21 H 1.09005 * 119.29896 * 3.69980 * 20 14 12 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 28 28 H 1.09005 * 115.52207 * 34.50234 * 14 12 11 29 29 H 1.08996 * 110.48619 * 30.89092 * 17 15 14 30 30 H 1.08997 * 110.48817 * 153.40498 * 17 15 14 31 31 H 1.09001 * 110.75522 * 156.25688 * 18 17 15 32 32 H 1.09000 * 110.75714 * 279.62526 * 18 17 15 33 33 H 1.09005 * 110.48677 * 80.73065 * 19 18 17 34 34 H 1.08996 * 110.48478 * 203.37462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0008 15 6 2.2564 -8.6929 -0.0009 16 1 3.3430 -8.6323 -0.0624 17 6 1.5869 -9.9847 -0.5136 18 6 0.8964 -10.5778 0.7397 19 6 0.3718 -9.3165 1.4699 20 6 1.5007 -8.2567 1.2671 21 1 2.0308 -7.8749 2.1397 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 0.5429 -4.9308 -0.0011 28 1 0.4967 -7.4047 -0.5583 29 1 0.8494 -9.7531 -1.2819 30 1 2.3363 -10.6748 -0.9011 31 1 0.0711 -11.2299 0.4537 32 1 1.6154 -11.1125 1.3603 33 1 -0.5621 -8.9770 1.0218 34 1 0.2346 -9.5200 2.5319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162868860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:43 Heat of formation + Delta-G solvation = -35.439898 kcal Electronic energy + Delta-G solvation = -14622.307513 eV Core-core repulsion = 12133.824474 eV Total energy + Delta-G solvation = -2488.483039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.17425 -38.13279 -34.82385 -32.83038 -31.87011 -29.60698 -28.30454 -25.37839 -23.41162 -21.09874 -20.68070 -19.86648 -19.67362 -17.24087 -16.40012 -15.53514 -15.12139 -14.79088 -14.52264 -14.37258 -13.35858 -13.21498 -13.08423 -12.71498 -12.28838 -11.56727 -11.41331 -11.31044 -11.20977 -11.03920 -11.01692 -10.66064 -10.33472 -10.14825 -9.90479 -9.76975 -9.43340 -9.16050 -8.53025 -8.34159 -6.08994 -4.12009 2.76522 3.31531 3.35200 3.37943 3.54256 3.78346 4.39860 4.50997 4.61203 4.64588 5.02759 5.09073 5.25157 5.26743 5.27880 5.31158 5.44875 5.55998 5.65494 5.82871 5.89034 5.97816 6.15817 6.25973 6.35244 6.36487 6.74124 6.94063 7.51991 7.62042 7.89075 8.04583 8.28268 8.68196 8.93788 9.52754 11.02612 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.072012 B = 0.004347 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.729112 B = 6440.176689 C = 6651.916810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.717 5.717 12 C 0.534 3.466 13 O -0.552 6.552 14 C -0.161 4.161 15 C -0.135 4.135 16 H 0.120 0.880 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.095 4.095 20 C -0.140 4.140 21 H 0.116 0.884 22 H 0.263 0.737 23 H 0.023 0.977 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.399 0.601 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -18.546 1.064 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.366 5.366 12 C 0.319 3.681 13 O -0.431 6.431 14 C -0.183 4.183 15 C -0.153 4.153 16 H 0.138 0.862 17 C -0.134 4.134 18 C -0.161 4.161 19 C -0.133 4.133 20 C -0.158 4.158 21 H 0.134 0.866 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.232 0.768 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.632 -18.392 1.064 18.433 hybrid contribution -0.081 1.131 -0.036 1.134 sum -0.713 -17.261 1.028 17.306 Atomic orbital electron populations 1.69947 1.06091 1.26992 1.50304 1.24995 0.94898 0.99402 0.94960 0.86563 0.79512 0.82619 0.78789 1.20097 1.21225 1.20107 1.21020 0.93218 0.90420 1.51485 0.92306 1.19321 0.94193 0.91089 0.97864 1.21737 0.96079 0.81531 1.00754 1.46260 1.10580 1.06349 1.73435 1.19568 0.87504 0.84546 0.76445 1.90658 1.13975 1.87721 1.50725 1.22429 1.01728 0.90713 1.03390 1.23213 0.99167 0.91975 1.00956 0.86204 1.21994 0.99254 0.94665 0.97476 1.22677 0.99789 0.97176 0.96431 1.22328 0.96787 0.93333 1.00829 1.23664 1.00717 0.99601 0.91852 0.86562 0.92782 0.95915 0.95921 0.92569 0.92604 0.76785 0.86398 0.91270 0.90993 0.91261 0.91214 0.91056 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 11 N -0.72 -13.02 5.56 -60.29 -0.33 -13.35 16 12 C 0.53 9.49 7.61 -10.99 -0.08 9.41 16 13 O -0.55 -11.86 16.32 5.56 0.09 -11.77 16 14 C -0.16 -2.14 5.70 -91.78 -0.52 -2.66 16 15 C -0.13 -1.62 6.35 -89.49 -0.57 -2.19 16 16 H 0.12 1.64 7.78 -51.93 -0.40 1.23 16 17 C -0.10 -0.87 6.63 -25.07 -0.17 -1.04 16 18 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 19 C -0.10 -0.84 6.65 -24.04 -0.16 -1.00 16 20 C -0.14 -1.63 6.81 -88.45 -0.60 -2.23 16 21 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.40 6.27 8.47 -40.82 -0.35 5.92 16 28 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 287.96 15.07 4.34 4.34 Total: -1.00 -31.38 287.96 -8.40 -39.79 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.36 Total: 1.51 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.85 Total: -11.45 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.40 Total: -38.91 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.38 -8.40 -39.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162868860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.346 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds