Wall clock time and date at job start Mon Mar 30 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99850 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00466 * 179.97438 * 12 11 10 15 15 C 1.52992 * 117.46468 * 179.97438 * 14 12 11 16 16 H 1.09002 * 119.29740 * 356.29549 * 15 14 12 17 17 C 1.54264 * 118.20116 * 202.15054 * 15 14 12 18 18 C 1.54893 * 104.19433 * 272.21148 * 17 15 14 19 19 C 1.54891 * 102.74847 * 37.94386 * 18 17 15 20 20 C 1.52991 * 117.46397 * 249.04357 * 14 12 11 21 21 H 1.09005 * 119.29896 * 3.69980 * 20 14 12 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 28 28 H 1.09005 * 115.52207 * 34.50234 * 14 12 11 29 29 H 1.08996 * 110.48619 * 30.89092 * 17 15 14 30 30 H 1.08997 * 110.48817 * 153.40498 * 17 15 14 31 31 H 1.09001 * 110.75522 * 156.25688 * 18 17 15 32 32 H 1.09000 * 110.75714 * 279.62526 * 18 17 15 33 33 H 1.09005 * 110.48677 * 80.73065 * 19 18 17 34 34 H 1.08996 * 110.48478 * 203.37462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0008 15 6 2.2564 -8.6929 -0.0009 16 1 3.3430 -8.6323 -0.0624 17 6 1.5869 -9.9847 -0.5136 18 6 0.8964 -10.5778 0.7397 19 6 0.3718 -9.3165 1.4699 20 6 1.5007 -8.2567 1.2671 21 1 2.0308 -7.8749 2.1397 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 0.5429 -4.9308 -0.0011 28 1 0.4967 -7.4047 -0.5583 29 1 0.8494 -9.7531 -1.2819 30 1 2.3363 -10.6748 -0.9011 31 1 0.0711 -11.2299 0.4537 32 1 1.6154 -11.1125 1.3603 33 1 -0.5621 -8.9770 1.0218 34 1 0.2346 -9.5200 2.5319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162868860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:43 Heat of formation + Delta-G solvation = -55.035256 kcal Electronic energy + Delta-G solvation = -14623.157231 eV Core-core repulsion = 12133.824474 eV Total energy + Delta-G solvation = -2489.332757 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34951 -39.36655 -36.60987 -34.83631 -32.81463 -31.46026 -29.04053 -27.19368 -24.85005 -22.81376 -21.67611 -21.06518 -20.63893 -18.70994 -18.31041 -16.92619 -16.54153 -16.46381 -15.91812 -15.61685 -14.79776 -14.56215 -14.30608 -13.98868 -13.78080 -13.25975 -12.94971 -12.57015 -12.42399 -12.29479 -12.22613 -11.96391 -11.71270 -11.66590 -11.50101 -11.12255 -10.96489 -10.62068 -10.60721 -10.06573 -8.25709 -6.36796 1.40847 1.42580 1.43415 1.51383 2.16006 2.42475 2.72490 3.08808 3.52780 3.72948 3.76946 4.07648 4.16665 4.26533 4.42709 4.45331 4.50769 4.54404 4.69870 4.80415 4.84384 5.00656 5.17918 5.22715 5.23581 5.25386 5.29915 5.45977 5.52469 5.54441 5.75882 6.13586 6.58779 6.75855 7.22879 7.32629 8.86016 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.072012 B = 0.004347 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.729112 B = 6440.176689 C = 6651.916810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.140 3.860 11 N -0.713 5.713 12 C 0.531 3.469 13 O -0.594 6.594 14 C -0.168 4.168 15 C -0.138 4.138 16 H 0.096 0.904 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.090 4.090 20 C -0.135 4.135 21 H 0.102 0.898 22 H 0.267 0.733 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.412 0.588 28 H 0.144 0.856 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -19.636 1.084 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.362 5.362 12 C 0.319 3.681 13 O -0.476 6.476 14 C -0.189 4.189 15 C -0.157 4.157 16 H 0.114 0.886 17 C -0.129 4.129 18 C -0.155 4.155 19 C -0.127 4.127 20 C -0.154 4.154 21 H 0.120 0.880 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.248 0.752 28 H 0.162 0.838 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.331 -19.505 1.085 19.581 hybrid contribution 0.145 1.447 -0.030 1.454 sum -1.185 -18.058 1.055 18.128 Atomic orbital electron populations 1.70050 1.07544 1.28151 1.50783 1.25876 0.95816 1.03107 0.94269 0.85484 0.78314 0.78042 0.79135 1.19330 1.20415 1.19351 1.21439 0.93572 0.91976 1.51926 0.92379 1.19126 0.94167 0.91671 0.96414 1.21246 0.95135 0.82359 0.99675 1.46097 1.11160 1.05431 1.73554 1.20360 0.87240 0.85673 0.74818 1.90633 1.16046 1.88404 1.52482 1.22389 1.02420 0.88445 1.05642 1.23318 0.98144 0.92652 1.01593 0.88561 1.22039 0.99575 0.92965 0.98335 1.22682 1.00406 0.96865 0.95511 1.22388 0.95905 0.92498 1.01941 1.23815 1.01697 0.99120 0.90755 0.88008 0.92453 0.97213 0.97266 0.93644 0.93720 0.75231 0.83838 0.90326 0.90103 0.89084 0.90912 0.89971 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.06 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.26 5.61 86.38 0.48 6.74 16 11 N -0.71 -26.08 5.56 -463.05 -2.57 -28.65 16 12 C 0.53 19.04 7.61 87.66 0.67 19.71 16 13 O -0.59 -26.23 16.32 -3.04 -0.05 -26.28 16 14 C -0.17 -4.28 5.70 -11.54 -0.07 -4.34 16 15 C -0.14 -3.20 6.35 -10.06 -0.06 -3.26 16 16 H 0.10 2.69 7.78 -2.39 -0.02 2.67 16 17 C -0.09 -1.42 6.63 31.67 0.21 -1.21 16 18 C -0.12 -1.43 6.91 31.89 0.22 -1.21 16 19 C -0.09 -1.31 6.65 32.34 0.22 -1.10 16 20 C -0.14 -2.97 6.81 -9.39 -0.06 -3.03 16 21 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 22 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.41 12.85 8.47 -92.70 -0.79 12.06 16 28 H 0.14 2.90 8.14 -2.38 -0.02 2.88 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -67.74 287.96 2.43 -65.31 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.29 Total: 14.51 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 2.45 Total: -16.47 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -2.29 Total: -83.01 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.74 2.43 -65.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162868860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.271 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds