Wall clock time and date at job start Mon Mar 30 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34512 * 125.78988 * 2 1 4 4 C 1.41380 * 106.84217 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.58013 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47570 * 259.97747 * 5 4 3 7 7 C 1.46892 * 111.00364 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47067 * 325.00173 * 7 6 5 9 9 C 1.52999 * 109.46936 * 85.00202 * 7 6 5 10 10 C 1.50696 * 109.47380 * 205.00348 * 7 6 5 11 11 H 1.08003 * 120.00139 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00077 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00056 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 119.99833 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.46956 * 60.00095 * 14 12 10 16 16 H 1.48503 * 109.46630 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46944 * 299.99753 * 14 12 10 18 18 C 1.34508 * 106.84125 * 0.02562 * 4 3 2 19 19 C 1.50701 * 125.79035 * 179.97438 * 18 4 3 20 20 O 1.34306 * 125.78985 * 179.69416 * 2 1 3 21 21 H 1.09002 * 109.47152 * 89.99824 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99925 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99906 * 1 2 3 24 24 H 1.08005 * 126.57982 * 0.03759 * 3 2 1 25 25 H 1.08999 * 109.46995 * 19.97952 * 5 4 3 26 26 H 1.09000 * 109.46821 * 139.97695 * 5 4 3 27 27 H 1.00900 * 111.00279 * 303.96007 * 6 5 4 28 28 H 1.08999 * 109.47075 * 300.00014 * 9 7 6 29 29 H 1.09001 * 109.47266 * 60.00093 * 9 7 6 30 30 H 1.08997 * 109.47498 * 180.02562 * 9 7 6 31 31 H 0.97002 * 119.99959 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47235 * 90.00289 * 19 18 4 33 33 H 1.09006 * 109.46903 * 209.99613 * 19 18 4 34 34 H 1.08997 * 109.47200 * 329.99765 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 0.0006 5 6 4.8732 1.4850 0.0014 6 7 5.4141 1.5637 -1.3621 7 6 6.6282 2.3898 -1.4001 8 1 6.5349 3.2059 -0.6835 9 6 7.8413 1.5302 -1.0390 10 6 6.8078 2.9556 -2.7852 11 1 6.0919 2.7243 -3.5600 12 6 7.8868 3.7676 -3.0636 13 7 8.7588 4.0489 -2.1202 14 14 8.1097 4.4684 -4.7808 15 1 6.9326 5.3030 -5.1315 16 1 9.3371 5.3035 -4.8190 17 1 8.2366 3.3562 -5.7566 18 6 3.5814 -0.7121 0.0004 19 6 4.7706 -1.6378 0.0003 20 8 2.2925 -1.0894 0.0058 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5138 24 1 1.9666 2.1204 0.0006 25 1 4.6259 2.4868 0.3525 26 1 5.6178 1.0417 0.6626 27 1 5.5911 0.6429 -1.7347 28 1 7.7114 1.1210 -0.0371 29 1 7.9346 0.7141 -1.7555 30 1 8.7422 2.1431 -1.0667 31 1 9.5177 4.6205 -2.3160 32 1 5.0573 -1.8612 1.0278 33 1 4.5106 -2.5632 -0.5137 34 1 5.6040 -1.1586 -0.5134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164068324.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:37 Heat of formation + Delta-G solvation = -17.404481 kcal Electronic energy + Delta-G solvation = -15092.312352 eV Core-core repulsion = 12604.611387 eV Total energy + Delta-G solvation = -2487.700965 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.52589 -38.05811 -35.28905 -33.89244 -33.53692 -30.68511 -30.01262 -27.26267 -26.39130 -24.82470 -22.33435 -22.11377 -20.18518 -18.34726 -17.29629 -17.28766 -16.70365 -15.98809 -15.35099 -15.20468 -14.70190 -14.25276 -14.11864 -13.70375 -13.59335 -13.53305 -13.42350 -13.28353 -13.00731 -12.83152 -12.71592 -12.44273 -12.16897 -12.09599 -11.87036 -11.07820 -10.57231 -10.47936 -9.12236 -8.91542 -8.08998 -6.20601 0.78164 1.43632 1.45563 1.53265 1.62895 2.03656 2.45142 3.18849 3.74392 3.81649 3.97248 4.06547 4.36345 4.48132 4.55655 4.64161 4.66865 4.74557 4.75657 4.82720 4.88974 4.99842 5.02760 5.10494 5.22814 5.39421 5.45276 5.65052 5.69538 5.81968 6.25802 6.27076 6.64564 6.80190 6.93676 7.49321 8.96114 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040556 B = 0.005947 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.237929 B = 4707.385629 C = 5054.725821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.025 4.025 3 C -0.217 4.217 4 C -0.182 4.182 5 C 0.135 3.865 6 N -0.682 5.682 7 C 0.215 3.785 8 H 0.001 0.999 9 C -0.155 4.155 10 C -0.518 4.518 11 H 0.051 0.949 12 C 0.010 3.990 13 N -0.922 5.922 14 Si 0.961 3.039 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.024 4.024 19 C -0.070 4.070 20 O -0.185 6.185 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.087 0.913 24 H 0.150 0.850 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.330 0.670 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 -9.890 5.183 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.236 4.236 4 C -0.183 4.183 5 C 0.006 3.994 6 N -0.313 5.313 7 C 0.106 3.894 8 H 0.019 0.981 9 C -0.215 4.215 10 C -0.556 4.556 11 H 0.070 0.930 12 C -0.188 4.188 13 N -0.562 5.562 14 Si 0.787 3.213 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.196 1.196 18 C -0.074 4.074 19 C -0.127 4.127 20 O -0.083 6.083 21 H 0.109 0.891 22 H 0.122 0.878 23 H 0.106 0.894 24 H 0.167 0.833 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.148 0.852 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.331 -9.549 5.033 16.388 hybrid contribution 1.168 0.372 -0.334 1.271 sum -11.162 -9.177 4.699 15.195 Atomic orbital electron populations 1.20442 0.82066 1.05234 1.04516 1.23043 0.95498 0.83313 1.05625 1.21650 0.92218 1.00219 1.09539 1.20279 0.95838 0.93573 1.08645 1.20087 0.91396 0.97294 0.90602 1.60695 1.33086 1.17812 1.19675 1.18969 0.84390 0.90611 0.95391 0.98071 1.22228 1.03105 0.99180 0.96964 1.21403 1.08309 1.29169 0.96739 0.93029 1.25706 0.95504 0.96678 1.00912 1.69998 1.13999 1.37998 1.34178 0.85565 0.77246 0.78365 0.80125 1.20102 1.20790 1.19608 1.22594 0.83854 0.94386 1.06613 1.20378 0.90194 0.97671 1.04417 1.83913 1.16404 1.35540 1.72432 0.89146 0.87832 0.89384 0.83265 0.92331 0.94993 0.85243 0.95361 0.94725 0.91869 0.92937 0.88723 0.88908 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.42 71.24 0.74 -0.35 16 2 C -0.03 -0.69 7.32 24.83 0.18 -0.51 16 3 C -0.22 -6.86 10.77 22.19 0.24 -6.63 16 4 C -0.18 -6.30 5.68 -19.94 -0.11 -6.42 16 5 C 0.14 5.25 5.50 85.56 0.47 5.72 16 6 N -0.68 -30.47 6.22 -499.49 -3.11 -33.58 16 7 C 0.21 11.17 2.57 44.17 0.11 11.28 16 8 H 0.00 0.08 7.80 -2.39 -0.02 0.06 16 9 C -0.16 -7.49 8.94 71.98 0.64 -6.85 16 10 C -0.52 -29.51 8.84 25.60 0.23 -29.28 16 11 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 12 C 0.01 0.58 5.30 84.66 0.45 1.02 16 13 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 14 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 C -0.02 -0.74 7.32 24.83 0.18 -0.56 16 19 C -0.07 -1.67 10.20 71.24 0.73 -0.95 16 20 O -0.19 -5.53 10.65 -2.55 -0.03 -5.56 16 21 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 25 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 26 H 0.03 1.19 7.43 -2.39 -0.02 1.17 16 27 H 0.33 13.88 7.62 -89.69 -0.68 13.20 16 28 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 29 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.08 2.04 7.03 -2.39 -0.02 2.03 16 Total: -1.00 -64.79 286.38 3.40 -61.40 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.40 Total: 18.02 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.86 Total: -33.51 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.86 Total: -86.96 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.03 Total: -5.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.79 3.40 -61.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164068324.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.993 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds