Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47189 * 239.99813 * 3 2 1 5 5 H 1.48497 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47238 * 119.99949 * 3 2 1 7 7 C 1.37882 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99999 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99705 * 179.97438 * 11 10 9 14 14 H 1.08997 * 110.36166 * 60.87917 * 13 11 10 15 15 C 1.54578 * 110.40633 * 298.54984 * 13 11 10 16 16 C 1.55925 * 104.64637 * 241.09339 * 15 13 11 17 17 H 1.09003 * 115.92511 * 160.03164 * 16 15 13 18 18 C 1.55924 * 104.49951 * 289.72144 * 16 15 13 19 19 C 1.54585 * 104.64045 * 70.27733 * 18 16 15 20 20 C 1.55917 * 104.64613 * 359.97438 * 19 18 16 21 21 H 1.09006 * 116.53077 * 160.39456 * 20 19 18 22 22 C 1.56949 * 100.65384 * 33.78032 * 20 19 18 23 23 H 0.97000 * 120.00378 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47268 * 59.99644 * 9 7 2 25 25 H 1.09003 * 109.46836 * 299.99960 * 9 7 2 26 26 H 0.97004 * 120.00362 * 0.02562 * 10 9 7 27 27 H 1.09001 * 110.40527 * 122.30513 * 15 13 11 28 28 H 1.09004 * 110.50357 * 359.93521 * 15 13 11 29 29 H 1.09001 * 110.40189 * 189.06370 * 18 16 15 30 30 H 1.08998 * 110.40393 * 311.48744 * 18 16 15 31 31 H 1.09004 * 110.39902 * 241.20719 * 19 18 16 32 32 H 1.09001 * 110.50032 * 118.84410 * 19 18 16 33 33 H 1.08992 * 112.02927 * 189.69228 * 22 20 19 34 34 H 1.09001 * 112.02460 * 63.17151 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0005 14 1 3.3581 -5.9937 0.8927 15 6 3.6086 -5.9886 -1.2728 16 6 3.3017 -7.3308 -2.0048 17 1 3.5451 -7.3608 -3.0668 18 6 3.9597 -8.4237 -1.1083 19 6 3.0840 -8.4638 0.1650 20 6 1.9799 -7.3910 -0.0818 21 1 1.0770 -7.4734 0.5232 22 6 1.7890 -7.5229 -1.6341 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4355 0.0009 27 1 4.6641 -5.9338 -1.0066 28 1 3.3313 -5.1416 -1.9003 29 1 3.9418 -9.3900 -1.6123 30 1 4.9828 -8.1439 -0.8572 31 1 3.6767 -8.2038 1.0421 32 1 2.6357 -9.4496 0.2890 33 1 1.1646 -6.7263 -2.0383 34 1 1.4209 -8.5087 -1.9183 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217811409.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = -54.236483 kcal Electronic energy + Delta-G solvation = -15388.182304 eV Core-core repulsion = 12898.884184 eV Total energy + Delta-G solvation = -2489.298120 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49729 -37.86253 -34.12956 -32.35352 -30.65269 -29.24743 -27.86741 -26.82907 -23.36174 -22.03371 -20.09178 -19.55834 -18.56544 -17.12963 -16.01856 -15.69261 -15.25220 -14.80005 -14.50491 -13.88517 -13.67663 -12.68636 -12.47691 -11.98688 -11.91937 -11.55748 -11.31829 -11.14657 -11.03114 -10.87737 -10.85471 -10.78260 -10.63690 -10.39461 -10.27258 -10.12133 -9.38757 -8.82562 -8.70709 -7.82360 -6.14857 -4.21766 3.26051 3.30782 3.32360 3.45575 4.12672 4.37787 4.50672 4.62187 4.66803 5.19551 5.21110 5.24759 5.31461 5.44581 5.48352 5.51749 5.65341 5.80806 5.89055 5.94510 6.01545 6.11348 6.23612 6.23791 6.29485 6.41618 6.52720 7.34474 7.50041 7.54928 7.69844 7.99792 8.68877 8.81501 9.17609 9.45205 10.95374 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057146 B = 0.005784 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.855257 B = 4839.509353 C = 5061.734895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.504 3.496 12 O -0.556 6.556 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.112 4.112 16 C -0.107 4.107 17 H 0.097 0.903 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.078 4.078 21 H 0.106 0.894 22 C -0.123 4.123 23 H 0.266 0.734 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.389 0.611 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.922 -14.203 -1.899 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.362 5.362 11 C 0.289 3.711 12 O -0.436 6.436 13 C -0.135 4.135 14 H 0.109 0.891 15 C -0.150 4.150 16 C -0.125 4.125 17 H 0.115 0.885 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.096 4.096 21 H 0.124 0.876 22 C -0.161 4.161 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.222 0.778 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.895 -14.187 -1.886 16.345 hybrid contribution 0.931 1.154 0.076 1.485 sum 8.826 -13.033 -1.810 15.844 Atomic orbital electron populations 1.69964 1.06117 1.27376 1.48897 1.24951 0.94904 0.99424 0.94719 0.86479 0.79418 0.82353 0.78675 1.20081 1.21061 1.20080 1.21201 0.93201 0.90535 1.53220 0.92011 1.19073 0.88365 0.82078 0.97601 1.46474 1.10970 1.06249 1.72482 1.20429 0.89362 0.84260 0.77035 1.90631 1.16952 1.84969 1.51013 1.22469 0.96911 0.94492 0.99636 0.89095 1.22630 0.98860 0.98087 0.95420 1.23572 0.96082 0.94759 0.98057 0.88503 1.22611 0.98628 0.98468 0.95936 1.22637 0.96930 0.98826 0.97587 1.23347 0.97085 0.92117 0.97061 0.87616 1.23575 0.95670 1.01339 0.95484 0.92414 0.95673 0.95672 0.77829 0.91228 0.91025 0.92163 0.91900 0.91860 0.91868 0.90721 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.75 5.43 -5.20 -0.03 6.72 16 10 N -0.71 -15.40 5.43 -61.47 -0.33 -15.74 16 11 C 0.50 10.29 6.69 -10.98 -0.07 10.21 16 12 O -0.56 -13.57 15.69 5.56 0.09 -13.48 16 13 C -0.11 -1.69 2.70 -89.41 -0.24 -1.93 16 14 H 0.09 1.21 7.83 -51.93 -0.41 0.81 16 15 C -0.11 -1.44 5.78 -24.34 -0.14 -1.58 16 16 C -0.11 -1.22 5.19 -85.37 -0.44 -1.66 16 17 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.12 -1.17 6.21 -24.34 -0.15 -1.33 16 19 C -0.12 -1.31 6.21 -24.34 -0.15 -1.46 16 20 C -0.08 -1.07 4.10 -85.39 -0.35 -1.42 16 21 H 0.11 1.62 7.79 -51.93 -0.40 1.22 16 22 C -0.12 -1.65 6.30 -22.47 -0.14 -1.80 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.39 7.29 8.30 -40.82 -0.34 6.95 16 27 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 28 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.57 7.83 -51.93 -0.41 0.17 16 31 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.20 7.78 -51.93 -0.40 0.80 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -31.37 276.23 -7.75 -39.12 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.24 Total: 3.43 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.14 Total: -7.82 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.40 Total: -41.40 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.37 -7.75 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217811409.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.118 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds