Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47189 * 239.99813 * 3 2 1 5 5 H 1.48497 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47238 * 119.99949 * 3 2 1 7 7 C 1.37882 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99999 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99705 * 179.97438 * 11 10 9 14 14 H 1.08997 * 110.36166 * 60.87917 * 13 11 10 15 15 C 1.54578 * 110.40633 * 298.54984 * 13 11 10 16 16 C 1.55925 * 104.64637 * 241.09339 * 15 13 11 17 17 H 1.09003 * 115.92511 * 160.03164 * 16 15 13 18 18 C 1.55924 * 104.49951 * 289.72144 * 16 15 13 19 19 C 1.54585 * 104.64045 * 70.27733 * 18 16 15 20 20 C 1.55917 * 104.64613 * 359.97438 * 19 18 16 21 21 H 1.09006 * 116.53077 * 160.39456 * 20 19 18 22 22 C 1.56949 * 100.65384 * 33.78032 * 20 19 18 23 23 H 0.97000 * 120.00378 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47268 * 59.99644 * 9 7 2 25 25 H 1.09003 * 109.46836 * 299.99960 * 9 7 2 26 26 H 0.97004 * 120.00362 * 0.02562 * 10 9 7 27 27 H 1.09001 * 110.40527 * 122.30513 * 15 13 11 28 28 H 1.09004 * 110.50357 * 359.93521 * 15 13 11 29 29 H 1.09001 * 110.40189 * 189.06370 * 18 16 15 30 30 H 1.08998 * 110.40393 * 311.48744 * 18 16 15 31 31 H 1.09004 * 110.39902 * 241.20719 * 19 18 16 32 32 H 1.09001 * 110.50032 * 118.84410 * 19 18 16 33 33 H 1.08992 * 112.02927 * 189.69228 * 22 20 19 34 34 H 1.09001 * 112.02460 * 63.17151 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0005 14 1 3.3581 -5.9937 0.8927 15 6 3.6086 -5.9886 -1.2728 16 6 3.3017 -7.3308 -2.0048 17 1 3.5451 -7.3608 -3.0668 18 6 3.9597 -8.4237 -1.1083 19 6 3.0840 -8.4638 0.1650 20 6 1.9799 -7.3910 -0.0818 21 1 1.0770 -7.4734 0.5232 22 6 1.7890 -7.5229 -1.6341 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4355 0.0009 27 1 4.6641 -5.9338 -1.0066 28 1 3.3313 -5.1416 -1.9003 29 1 3.9418 -9.3900 -1.6123 30 1 4.9828 -8.1439 -0.8572 31 1 3.6767 -8.2038 1.0421 32 1 2.6357 -9.4496 0.2890 33 1 1.1646 -6.7263 -2.0383 34 1 1.4209 -8.5087 -1.9183 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217811409.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -75.242443 kcal Electronic energy + Delta-G solvation = -15389.093190 eV Core-core repulsion = 12898.884184 eV Total energy + Delta-G solvation = -2490.209007 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71897 -39.44191 -36.14597 -34.39460 -31.86276 -30.25462 -29.31422 -28.41303 -25.11787 -23.52075 -21.50823 -20.77704 -19.75024 -18.80894 -17.68101 -17.15431 -16.85962 -16.25462 -15.94760 -15.54405 -15.13783 -14.29099 -13.95304 -13.91306 -13.47602 -12.98684 -12.72831 -12.63970 -12.30330 -12.20758 -12.15780 -11.91536 -11.80722 -11.69916 -11.53029 -11.40877 -11.07034 -10.80842 -10.47497 -9.83146 -8.30705 -6.48136 1.41728 1.46260 1.54593 1.78695 2.31908 2.61412 3.03794 3.45050 3.60530 3.62843 4.09518 4.17870 4.35881 4.41638 4.51551 4.56772 4.62126 4.72624 4.94614 4.98165 5.06059 5.15605 5.18851 5.19501 5.21612 5.25707 5.39540 5.43234 5.48147 5.56048 5.69108 5.83228 6.62834 6.91920 7.21572 7.50335 8.81501 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057146 B = 0.005784 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.855257 B = 4839.509353 C = 5061.734895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.498 3.502 12 O -0.604 6.604 13 C -0.105 4.105 14 H 0.117 0.883 15 C -0.110 4.110 16 C -0.098 4.098 17 H 0.113 0.887 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.089 4.089 21 H 0.080 0.920 22 C -0.130 4.130 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.016 1.016 26 H 0.407 0.593 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.413 -14.922 -1.996 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.358 5.358 11 C 0.286 3.714 12 O -0.486 6.486 13 C -0.126 4.126 14 H 0.134 0.866 15 C -0.148 4.148 16 C -0.116 4.116 17 H 0.131 0.869 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.108 4.108 21 H 0.098 0.902 22 C -0.168 4.168 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.242 0.758 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.434 -14.939 -1.983 18.917 hybrid contribution -0.263 1.326 0.105 1.356 sum 11.171 -13.612 -1.879 17.709 Atomic orbital electron populations 1.70136 1.08372 1.28686 1.49867 1.26104 0.95782 1.04018 0.93722 0.85177 0.77896 0.76404 0.79553 1.18588 1.21002 1.18565 1.21585 0.94267 0.90572 1.53123 0.89844 1.18511 0.88760 0.84610 0.93758 1.46238 1.10997 1.05665 1.72886 1.21589 0.89863 0.84994 0.74926 1.90604 1.19644 1.85637 1.52708 1.22548 0.95997 0.91956 1.02059 0.86560 1.22687 0.99985 0.98271 0.93883 1.23624 0.94093 0.94571 0.99315 0.86883 1.22600 0.98952 0.98515 0.94727 1.22606 0.95767 0.97908 0.98761 1.23378 0.97489 0.92895 0.97019 0.90185 1.23596 0.97122 1.00710 0.95347 0.92209 0.99863 0.99766 0.75792 0.87955 0.93215 0.90453 0.90017 0.90645 0.90655 0.94777 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.18 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.56 -31.09 9.28 25.60 0.24 -30.85 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 15.21 5.43 85.63 0.46 15.67 16 10 N -0.71 -31.46 5.43 -466.79 -2.53 -34.00 16 11 C 0.50 21.08 6.69 87.65 0.59 21.66 16 12 O -0.60 -31.49 15.69 -3.03 -0.05 -31.54 16 13 C -0.10 -3.00 2.70 -10.01 -0.03 -3.03 16 14 H 0.12 2.78 7.83 -2.39 -0.02 2.76 16 15 C -0.11 -2.58 5.78 32.14 0.19 -2.39 16 16 C -0.10 -1.97 5.19 -7.39 -0.04 -2.01 16 17 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 18 C -0.11 -1.67 6.21 32.15 0.20 -1.47 16 19 C -0.11 -2.03 6.21 32.14 0.20 -1.83 16 20 C -0.09 -2.41 4.10 -7.41 -0.03 -2.44 16 21 H 0.08 2.55 7.79 -2.38 -0.02 2.54 16 22 C -0.13 -3.45 6.30 33.35 0.21 -3.24 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H 0.41 15.03 8.30 -92.71 -0.77 14.26 16 27 H 0.10 1.76 7.83 -2.39 -0.02 1.75 16 28 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.01 7.83 -2.39 -0.02 0.99 16 31 H 0.07 1.20 7.83 -2.38 -0.02 1.19 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.03 1.16 7.78 -2.39 -0.02 1.14 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.37 276.23 2.49 -69.88 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.31 Total: 17.15 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 2.45 Total: -9.26 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.25 Total: -91.04 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.54 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.37 2.49 -69.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217811409.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.358 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds