Wall clock time and date at job start Mon Mar 30 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99503 * 3 2 1 6 6 H 1.48499 * 109.47339 * 60.00004 * 3 2 1 7 7 C 1.38955 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 C 1.53003 * 109.46624 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.36228 * 52.67130 * 13 12 10 15 15 C 1.54583 * 110.40016 * 290.21375 * 13 12 10 16 16 C 1.55944 * 104.63441 * 240.00167 * 15 13 12 17 17 H 1.09002 * 116.27130 * 161.04823 * 16 15 13 18 18 C 1.55929 * 105.22802 * 290.80242 * 16 15 13 19 19 C 1.54586 * 104.63789 * 70.00547 * 18 16 15 20 20 C 1.55920 * 104.64512 * 359.97438 * 19 18 16 21 21 H 1.09004 * 115.92335 * 160.84251 * 20 19 18 22 22 C 1.56953 * 101.41299 * 34.02067 * 20 19 18 23 23 H 0.96990 * 120.00373 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 26 26 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 27 27 H 1.09001 * 110.40081 * 0.02562 * 15 13 12 28 28 H 1.09005 * 110.39750 * 122.41944 * 15 13 12 29 29 H 1.08994 * 110.40409 * 311.21547 * 18 16 15 30 30 H 1.08994 * 110.40109 * 188.79521 * 18 16 15 31 31 H 1.09003 * 110.40224 * 241.20516 * 19 18 16 32 32 H 1.08996 * 110.50045 * 118.84393 * 19 18 16 33 33 H 1.09000 * 112.02401 * 62.97165 * 22 20 19 34 34 H 1.08996 * 112.02590 * 189.49671 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0067 13 6 2.2381 -6.0259 0.0060 14 1 2.9585 -5.9093 0.8156 15 6 2.9637 -6.1136 -1.3561 16 6 2.6063 -7.5298 -1.9024 17 1 2.7435 -7.6828 -2.9728 18 6 3.3556 -8.5297 -0.9695 19 6 2.6130 -8.4336 0.3829 20 6 1.4856 -7.3844 0.1399 21 1 0.6573 -7.4023 0.8482 22 6 1.1208 -7.6624 -1.3611 23 1 -0.4850 0.8399 -0.0004 24 1 0.3533 -2.3907 0.0005 25 1 0.6209 -4.9186 0.8995 26 1 0.6134 -4.9228 -0.8804 27 1 2.6124 -5.3280 -2.0250 28 1 4.0424 -6.0410 -1.2173 29 1 4.3977 -8.2325 -0.8528 30 1 3.2906 -9.5423 -1.3676 31 1 3.2902 -8.0892 1.1646 32 1 2.1832 -9.3985 0.6518 33 1 0.7266 -8.6682 -1.5063 34 1 0.4515 -6.9036 -1.7664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225143387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:56 Heat of formation + Delta-G solvation = -55.522483 kcal Electronic energy + Delta-G solvation = -15422.182386 eV Core-core repulsion = 12932.828500 eV Total energy + Delta-G solvation = -2489.353885 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08611 -37.83861 -33.94271 -31.87771 -31.09064 -29.26447 -27.84729 -26.34482 -24.30141 -21.37776 -19.72293 -19.01064 -18.33339 -17.74139 -15.96030 -15.68256 -14.94040 -14.80244 -14.25686 -13.84308 -13.62099 -12.33956 -12.26629 -12.07212 -11.88017 -11.50406 -11.27084 -11.11320 -11.03826 -10.87395 -10.70472 -10.46407 -10.31564 -10.19028 -10.13122 -9.94328 -9.70657 -9.46798 -8.27619 -7.91534 -6.37664 -3.78147 3.18585 3.28594 3.36069 3.99571 4.20911 4.62094 4.66822 4.71369 5.11754 5.29202 5.36457 5.41544 5.52222 5.56480 5.66057 5.72438 5.72910 5.90391 5.97503 6.07751 6.10008 6.18109 6.23756 6.35076 6.37693 6.41858 6.55688 6.69257 6.76154 6.87092 7.59043 8.11365 8.66622 9.22608 9.61177 10.13015 10.80386 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.064082 B = 0.005793 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.832849 B = 4832.534502 C = 4978.030020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.442 3.558 11 O -0.594 6.594 12 C -0.126 4.126 13 C -0.063 4.063 14 H 0.076 0.924 15 C -0.100 4.100 16 C -0.111 4.111 17 H 0.091 0.909 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.104 4.104 21 H 0.093 0.907 22 C -0.125 4.125 23 H 0.270 0.730 24 H 0.392 0.608 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -14.000 -1.481 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.479 6.479 12 C -0.166 4.166 13 C -0.082 4.082 14 H 0.094 0.906 15 C -0.137 4.137 16 C -0.129 4.129 17 H 0.109 0.891 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.122 4.122 21 H 0.111 0.889 22 C -0.162 4.162 23 H 0.080 0.920 24 H 0.225 0.775 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.873 -13.823 -1.468 13.928 hybrid contribution -0.267 0.971 0.041 1.008 sum 0.606 -12.852 -1.428 12.945 Atomic orbital electron populations 1.69620 1.05927 1.27949 1.50979 1.25254 0.95615 0.99680 0.97496 0.85821 0.79696 0.81270 0.77677 1.19276 1.20784 1.20789 1.19765 0.93370 0.82436 1.47260 0.87980 1.41950 1.09192 1.04761 1.64400 1.20029 0.88354 0.85054 0.83749 1.90502 1.14017 1.87470 1.55925 1.21605 0.98654 0.93921 1.02432 1.21895 0.96189 0.91679 0.98452 0.90557 1.22520 1.00313 0.94821 0.96055 1.23918 0.95065 0.96098 0.97801 0.89121 1.22558 0.99137 0.98498 0.95388 1.22573 0.97373 0.98391 0.97312 1.23629 0.96791 0.95275 0.96532 0.88882 1.23865 0.96329 1.00418 0.95623 0.91996 0.77483 0.90754 0.90644 0.91699 0.92028 0.91874 0.92495 0.91801 0.92404 0.92056 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 13.05 55.50 0.72 -24.32 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.57 -14.75 5.29 -10.96 -0.06 -14.80 16 10 C 0.44 10.61 7.44 -10.98 -0.08 10.53 16 11 O -0.59 -16.16 14.82 5.55 0.08 -16.08 16 12 C -0.13 -2.26 4.94 -27.88 -0.14 -2.40 16 13 C -0.06 -1.03 1.90 -88.25 -0.17 -1.20 16 14 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.10 -1.62 4.95 -24.33 -0.12 -1.74 16 16 C -0.11 -1.41 5.21 -84.34 -0.44 -1.85 16 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.12 -1.38 6.24 -24.33 -0.15 -1.53 16 19 C -0.12 -1.40 6.22 -24.34 -0.15 -1.55 16 20 C -0.10 -1.34 4.54 -85.38 -0.39 -1.72 16 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 22 C -0.12 -1.52 6.46 -21.45 -0.14 -1.66 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.25 7.33 -51.93 -0.38 0.87 16 27 H 0.06 1.17 7.54 -51.93 -0.39 0.78 16 28 H 0.06 1.06 7.85 -51.93 -0.41 0.66 16 29 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.89 7.34 -51.93 -0.38 0.51 16 LS Contribution 272.65 15.07 4.11 4.11 Total: -1.00 -30.39 272.65 -7.32 -37.71 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.14 Total: 8.33 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.02 Total: -11.30 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.67 Total: -39.13 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.39 -7.32 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225143387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.810 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds