Wall clock time and date at job start Mon Mar 30 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99503 * 3 2 1 6 6 H 1.48499 * 109.47339 * 60.00004 * 3 2 1 7 7 C 1.38955 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 C 1.53003 * 109.46624 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.36228 * 52.67130 * 13 12 10 15 15 C 1.54583 * 110.40016 * 290.21375 * 13 12 10 16 16 C 1.55944 * 104.63441 * 240.00167 * 15 13 12 17 17 H 1.09002 * 116.27130 * 161.04823 * 16 15 13 18 18 C 1.55929 * 105.22802 * 290.80242 * 16 15 13 19 19 C 1.54586 * 104.63789 * 70.00547 * 18 16 15 20 20 C 1.55920 * 104.64512 * 359.97438 * 19 18 16 21 21 H 1.09004 * 115.92335 * 160.84251 * 20 19 18 22 22 C 1.56953 * 101.41299 * 34.02067 * 20 19 18 23 23 H 0.96990 * 120.00373 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 26 26 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 27 27 H 1.09001 * 110.40081 * 0.02562 * 15 13 12 28 28 H 1.09005 * 110.39750 * 122.41944 * 15 13 12 29 29 H 1.08994 * 110.40409 * 311.21547 * 18 16 15 30 30 H 1.08994 * 110.40109 * 188.79521 * 18 16 15 31 31 H 1.09003 * 110.40224 * 241.20516 * 19 18 16 32 32 H 1.08996 * 110.50045 * 118.84393 * 19 18 16 33 33 H 1.09000 * 112.02401 * 62.97165 * 22 20 19 34 34 H 1.08996 * 112.02590 * 189.49671 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0067 13 6 2.2381 -6.0259 0.0060 14 1 2.9585 -5.9093 0.8156 15 6 2.9637 -6.1136 -1.3561 16 6 2.6063 -7.5298 -1.9024 17 1 2.7435 -7.6828 -2.9728 18 6 3.3556 -8.5297 -0.9695 19 6 2.6130 -8.4336 0.3829 20 6 1.4856 -7.3844 0.1399 21 1 0.6573 -7.4023 0.8482 22 6 1.1208 -7.6624 -1.3611 23 1 -0.4850 0.8399 -0.0004 24 1 0.3533 -2.3907 0.0005 25 1 0.6209 -4.9186 0.8995 26 1 0.6134 -4.9228 -0.8804 27 1 2.6124 -5.3280 -2.0250 28 1 4.0424 -6.0410 -1.2173 29 1 4.3977 -8.2325 -0.8528 30 1 3.2906 -9.5423 -1.3676 31 1 3.2902 -8.0892 1.1646 32 1 2.1832 -9.3985 0.6518 33 1 0.7266 -8.6682 -1.5063 34 1 0.4515 -6.9036 -1.7664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225143387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:56 Heat of formation + Delta-G solvation = -74.135904 kcal Electronic energy + Delta-G solvation = -15422.989524 eV Core-core repulsion = 12932.828500 eV Total energy + Delta-G solvation = -2490.161024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30071 -39.69682 -36.00975 -33.45943 -32.99261 -30.35941 -28.93824 -27.86285 -26.13334 -22.65718 -20.98849 -20.58161 -19.88520 -19.42931 -17.69576 -16.82455 -16.67886 -16.20319 -15.75648 -15.70443 -15.22997 -14.16301 -13.59951 -13.44421 -13.37814 -13.12658 -12.90837 -12.42501 -12.33496 -12.13288 -12.06875 -11.99652 -11.72069 -11.55949 -11.52715 -11.36785 -11.11719 -10.85181 -10.25188 -10.01586 -8.47852 -5.96768 1.35119 1.39655 1.54235 2.06959 2.29157 3.19649 3.21658 3.62112 3.65968 3.72016 4.19820 4.25406 4.36646 4.44610 4.54393 4.59540 4.60163 4.65752 4.78106 4.88485 4.97418 5.01887 5.15133 5.23202 5.31157 5.32705 5.38926 5.41416 5.47116 5.50984 5.63550 6.00168 6.58991 7.11728 7.56644 8.12543 8.70065 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.064082 B = 0.005793 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.832849 B = 4832.534502 C = 4978.030020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.577 5.577 10 C 0.437 3.563 11 O -0.631 6.631 12 C -0.114 4.114 13 C -0.066 4.066 14 H 0.049 0.951 15 C -0.103 4.103 16 C -0.106 4.106 17 H 0.104 0.896 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.096 4.096 21 H 0.111 0.889 22 C -0.119 4.119 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -15.300 -1.625 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.519 6.519 12 C -0.154 4.154 13 C -0.085 4.085 14 H 0.067 0.933 15 C -0.141 4.141 16 C -0.124 4.124 17 H 0.122 0.878 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.114 4.114 21 H 0.129 0.871 22 C -0.156 4.156 23 H 0.087 0.913 24 H 0.230 0.770 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.323 -15.136 -1.611 15.225 hybrid contribution 0.128 1.376 0.084 1.384 sum -0.196 -13.760 -1.527 13.846 Atomic orbital electron populations 1.69678 1.06843 1.29236 1.50505 1.26052 0.96559 1.02429 0.96290 0.84869 0.77930 0.77073 0.78435 1.19942 1.19459 1.19450 1.19713 0.92630 0.84269 1.49898 0.90559 1.42038 1.09296 1.04889 1.65161 1.21133 0.88277 0.86470 0.81571 1.90473 1.16082 1.88285 1.57067 1.21608 0.98751 0.90757 1.04303 1.21906 0.95777 0.93361 0.97411 0.93282 1.22492 0.98782 0.96800 0.96028 1.23948 0.96119 0.93549 0.98782 0.87777 1.22568 0.98347 0.99352 0.95203 1.22592 0.96837 0.99148 0.97011 1.23658 0.97223 0.92693 0.97819 0.87104 1.23865 0.95450 1.01829 0.94433 0.91281 0.77044 0.88533 0.88710 0.94281 0.94392 0.93014 0.90026 0.92932 0.89851 0.89408 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.84 13.05 21.66 0.28 -50.55 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.88 29.55 68.60 2.03 45.90 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.34 -19.68 9.68 84.04 0.81 -18.87 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -30.80 5.29 -306.97 -1.62 -32.42 16 10 C 0.44 21.61 7.44 87.65 0.65 22.26 16 11 O -0.63 -36.03 14.82 -3.06 -0.05 -36.08 16 12 C -0.11 -4.06 4.94 29.85 0.15 -3.92 16 13 C -0.07 -2.13 1.90 -9.26 -0.02 -2.14 16 14 H 0.05 1.84 7.58 -2.39 -0.02 1.83 16 15 C -0.10 -3.42 4.95 32.15 0.16 -3.26 16 16 C -0.11 -2.51 5.21 -6.73 -0.04 -2.55 16 17 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.12 -2.47 6.24 32.15 0.20 -2.27 16 19 C -0.12 -2.48 6.22 32.14 0.20 -2.28 16 20 C -0.10 -2.21 4.54 -7.40 -0.03 -2.24 16 21 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 22 C -0.12 -2.49 6.46 34.01 0.22 -2.27 16 23 H 0.28 14.25 8.31 -92.72 -0.77 13.48 16 24 H 0.40 20.07 7.90 -92.70 -0.73 19.34 16 25 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.09 3.03 7.33 -2.39 -0.02 3.02 16 27 H 0.04 1.46 7.54 -2.39 -0.02 1.44 16 28 H 0.04 1.39 7.85 -2.38 -0.02 1.37 16 29 H 0.05 1.20 7.86 -2.39 -0.02 1.18 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.22 7.82 -2.39 -0.02 1.20 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.49 7.34 -2.39 -0.02 1.47 16 Total: -1.00 -67.03 272.65 3.77 -63.27 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.35 Total: 27.71 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 2.77 Total: -17.82 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.34 Total: -82.98 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.05 Total: -36.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.03 3.77 -63.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225143387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.870 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds