Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.05059 * 2 1 4 4 C 1.54270 * 110.02921 * 238.58614 * 2 1 3 5 5 H 1.08994 * 110.48638 * 335.77794 * 4 2 1 6 6 N 1.46497 * 110.48497 * 98.42842 * 4 2 1 7 7 C 1.25006 * 119.99787 * 236.22693 * 6 4 2 8 8 O 4.52743 * 88.44157 * 269.80837 * 2 1 3 9 9 C 1.54895 * 104.19143 * 217.10143 * 4 2 1 10 10 C 1.54891 * 102.74704 * 37.94464 * 9 4 2 11 11 C 1.53873 * 110.03508 * 121.41722 * 2 1 3 12 12 C 1.52999 * 110.07029 * 359.97438 * 11 2 1 13 13 C 1.50701 * 110.03232 * 238.57341 * 11 2 1 14 14 H 1.08002 * 119.99761 * 1.37277 * 13 11 2 15 15 C 1.37871 * 119.99694 * 181.65839 * 13 11 2 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 H 1.09002 * 109.47121 * 298.57836 * 1 2 3 22 22 H 1.08994 * 109.47702 * 58.58335 * 1 2 3 23 23 H 1.09000 * 109.46935 * 178.58309 * 1 2 3 24 24 H 1.09002 * 109.46855 * 181.41790 * 3 2 1 25 25 H 1.09000 * 109.47175 * 301.41448 * 3 2 1 26 26 H 1.09000 * 109.47555 * 61.42162 * 3 2 1 27 27 H 1.08996 * 110.75273 * 279.62941 * 9 4 2 28 28 H 1.09002 * 110.90884 * 156.33261 * 9 4 2 29 29 H 1.08995 * 110.48302 * 203.37920 * 10 9 4 30 30 H 1.08995 * 110.60174 * 80.79050 * 10 9 4 31 31 H 1.09005 * 109.47512 * 299.27774 * 12 11 2 32 32 H 1.08993 * 109.47641 * 59.28387 * 12 11 2 33 33 H 1.09005 * 109.46864 * 179.28283 * 12 11 2 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0584 -0.7554 -1.2369 5 1 1.3143 -1.4660 -1.5966 6 7 2.4230 0.1879 -2.2968 7 6 1.9063 0.0847 -3.4304 8 8 1.4069 -0.0151 -4.5257 9 6 3.3137 -1.5007 -0.7192 10 6 2.8875 -1.9406 0.7034 11 6 2.0572 -0.7536 1.2337 12 6 0.8870 -1.2668 2.0751 13 6 2.9276 0.1565 2.0615 14 1 3.0774 1.1824 1.7591 15 6 3.5373 -0.3223 3.2016 16 7 3.3549 -1.5716 3.5698 17 14 4.6225 0.8036 4.2235 18 1 4.6652 2.1503 3.5992 19 1 4.0690 0.9116 5.5973 20 1 5.9965 0.2438 4.2861 21 1 -0.3633 0.4916 0.9025 22 1 -0.3634 0.5356 -0.8769 23 1 -0.3633 -1.0274 -0.0254 24 1 3.1443 1.4263 -0.0254 25 1 1.6760 1.9622 -0.8770 26 1 1.7174 1.9472 0.9024 27 1 4.1709 -0.8289 -0.6752 28 1 3.5357 -2.3677 -1.3415 29 1 3.7638 -2.1036 1.3308 30 1 2.2779 -2.8431 0.6593 31 1 0.2856 -0.4232 2.4141 32 1 0.2705 -1.9333 1.4721 33 1 1.2711 -1.8095 2.9389 34 1 3.7841 -1.9085 4.3717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238208834.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -10.220404 kcal Electronic energy + Delta-G solvation = -16152.205674 eV Core-core repulsion = 13664.816234 eV Total energy + Delta-G solvation = -2487.389440 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40788 -38.50427 -35.05490 -32.43386 -31.32337 -29.17914 -27.47582 -24.47866 -24.23416 -22.51348 -20.30415 -19.15244 -17.67979 -16.23765 -15.62808 -15.34369 -15.21162 -14.86616 -14.05397 -13.59791 -13.01614 -12.70572 -12.17094 -11.86836 -11.65349 -11.37568 -11.07400 -10.86791 -10.78830 -10.44633 -10.35457 -10.30599 -10.06990 -9.73234 -9.62883 -9.37142 -9.05595 -8.75244 -8.46022 -8.28125 -5.95921 -4.01922 1.50858 2.55982 3.29591 3.39035 3.42465 3.66140 4.44615 5.25699 5.30000 5.41081 5.51872 5.78770 5.99771 6.11793 6.17548 6.34491 6.42751 6.48921 6.61041 6.65923 6.70311 6.86036 6.90079 7.00347 7.12921 7.21658 7.33719 7.39883 7.51716 7.81419 7.96952 8.17221 8.37816 8.52011 8.98326 9.63221 11.07364 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.037658 B = 0.009039 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.346171 B = 3096.787717 C = 3197.295599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.104 4.104 4 C 0.132 3.868 5 H 0.063 0.937 6 N -0.519 5.519 7 C 0.590 3.410 8 O -0.398 6.398 9 C -0.115 4.115 10 C -0.097 4.097 11 C 0.082 3.918 12 C -0.132 4.132 13 C -0.505 4.505 14 H 0.073 0.927 15 C 0.062 3.938 16 N -0.887 5.887 17 Si 0.884 3.116 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.287 1.287 21 H 0.063 0.937 22 H 0.031 0.969 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.011 0.989 33 H 0.081 0.919 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 0.439 -6.246 6.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.161 4.161 4 C 0.032 3.968 5 H 0.082 0.918 6 N -0.268 5.268 7 C 0.284 3.716 8 O -0.257 6.257 9 C -0.153 4.153 10 C -0.136 4.136 11 C 0.082 3.918 12 C -0.189 4.189 13 C -0.543 4.543 14 H 0.091 0.909 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.213 1.213 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.099 0.901 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.534 0.659 -6.300 6.822 hybrid contribution 0.274 0.296 0.215 0.457 sum -2.260 0.955 -6.086 6.562 Atomic orbital electron populations 1.22028 0.96050 1.00822 1.00605 1.21453 0.93616 0.96839 0.93736 1.21607 1.01526 0.94284 0.98652 1.22723 0.98263 0.89350 0.86484 0.91846 1.68769 1.30966 1.31146 0.95955 1.27217 0.79273 0.75454 0.89652 1.90938 1.54859 1.60736 1.19198 1.22686 0.96383 0.97926 0.98278 1.22355 1.01843 0.97197 0.92174 1.18647 0.92351 0.91639 0.89192 1.21975 0.96787 0.98701 1.01477 1.21606 1.27585 0.97787 1.07281 0.90862 1.24948 0.96575 0.94873 0.97462 1.69907 1.43932 1.14072 1.24745 0.86664 0.80514 0.81268 0.80316 1.19846 1.21325 1.21291 0.91796 0.95000 0.92972 0.91853 0.95636 0.92712 0.90363 0.93290 0.89387 0.94762 0.95260 0.97052 0.90078 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.21 37.16 0.27 -2.07 16 2 C -0.06 -1.05 0.91 -153.39 -0.14 -1.19 16 3 C -0.10 -1.98 6.16 37.16 0.23 -1.75 16 4 C 0.13 2.27 2.94 -66.27 -0.19 2.08 16 5 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 6 N -0.52 -8.55 8.40 -21.58 -0.18 -8.73 16 7 C 0.59 8.99 16.63 49.98 0.83 9.82 16 8 O -0.40 -6.36 17.99 5.97 0.11 -6.25 16 9 C -0.11 -2.09 6.58 -24.73 -0.16 -2.25 16 10 C -0.10 -2.06 5.44 -25.07 -0.14 -2.20 16 11 C 0.08 1.79 0.62 -154.54 -0.10 1.70 16 12 C -0.13 -2.89 6.98 37.16 0.26 -2.63 16 13 C -0.50 -12.37 7.12 -34.44 -0.25 -12.61 16 14 H 0.07 1.80 4.66 -52.49 -0.24 1.55 16 15 C 0.06 1.58 4.92 -17.82 -0.09 1.49 16 16 N -0.89 -23.22 9.91 55.43 0.55 -22.68 16 17 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H 0.06 1.11 6.76 -51.93 -0.35 0.76 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.85 6.70 -51.93 -0.35 0.50 16 24 H 0.06 1.30 7.13 -51.93 -0.37 0.93 16 25 H 0.02 0.44 7.52 -51.93 -0.39 0.05 16 26 H 0.05 1.08 7.08 -51.93 -0.37 0.72 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 2.12 6.40 -51.93 -0.33 1.79 16 30 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 31 H 0.03 0.62 6.79 -51.93 -0.35 0.27 16 32 H 0.01 0.21 6.68 -51.93 -0.35 -0.14 16 33 H 0.08 2.00 6.11 -51.93 -0.32 1.68 16 34 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -24.99 266.68 -4.63 -29.62 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.63 Total: -1.63 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 0.52 Total: -9.62 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.37 Total: -31.40 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -24.99 -4.63 -29.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238208834.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.397 kcal (2) G-P(sol) polarization free energy of solvation -24.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds