Wall clock time and date at job start Mon Mar 30 2020 03:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.05858 * 2 1 4 4 C 1.54272 * 110.03314 * 238.58121 * 2 1 3 5 5 H 1.09005 * 110.48312 * 335.78678 * 4 2 1 6 6 N 1.46501 * 110.48485 * 98.42888 * 4 2 1 7 7 C 1.24995 * 119.99826 * 240.00504 * 6 4 2 8 8 O 4.48932 * 87.13769 * 270.91574 * 2 1 3 9 9 C 1.54881 * 104.19817 * 217.11013 * 4 2 1 10 10 C 1.54895 * 102.75094 * 37.94045 * 9 4 2 11 11 C 1.53881 * 110.03103 * 121.41711 * 2 1 3 12 12 C 1.52997 * 110.03192 * 238.61446 * 11 2 1 13 13 C 1.50701 * 110.03197 * 0.02562 * 11 2 1 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 2 15 15 C 1.37871 * 119.99694 * 180.27875 * 13 11 2 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 H 1.09003 * 109.47310 * 298.58467 * 1 2 3 22 22 H 1.09002 * 109.46844 * 58.58169 * 1 2 3 23 23 H 1.08996 * 109.47558 * 178.58573 * 1 2 3 24 24 H 1.09003 * 109.46858 * 181.41405 * 3 2 1 25 25 H 1.08997 * 109.47023 * 301.41343 * 3 2 1 26 26 H 1.08999 * 109.47110 * 61.41885 * 3 2 1 27 27 H 1.08998 * 110.76122 * 156.25522 * 9 4 2 28 28 H 1.09006 * 110.75300 * 279.44326 * 9 4 2 29 29 H 1.08997 * 110.48784 * 203.38058 * 10 9 4 30 30 H 1.08996 * 110.48252 * 80.73717 * 10 9 4 31 31 H 1.08999 * 109.47197 * 180.69395 * 12 11 2 32 32 H 1.09002 * 109.47047 * 300.69301 * 12 11 2 33 33 H 1.08993 * 109.47161 * 60.69285 * 12 11 2 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 1 1.3141 -1.4661 -1.5966 6 7 2.4230 0.1878 -2.2968 7 6 1.8549 0.1287 -3.4086 8 8 1.3058 0.0717 -4.4831 9 6 3.3135 -1.5009 -0.7191 10 6 2.8873 -1.9408 0.7036 11 6 2.0570 -0.7536 1.2338 12 6 2.9399 0.1706 2.0748 13 6 0.9037 -1.2597 2.0612 14 1 -0.1116 -1.0677 1.7469 15 6 1.1446 -1.9625 3.2226 16 7 2.3809 -2.1960 3.6055 17 14 -0.2850 -2.5831 4.2524 18 1 -1.5650 -2.1916 3.6093 19 1 -0.2149 -4.0629 4.3559 20 1 -0.2118 -1.9879 5.6109 21 1 -0.3634 0.4917 0.9024 22 1 -0.3633 0.5357 -0.8770 23 1 -0.3634 -1.0273 -0.0254 24 1 3.1444 1.4261 -0.0254 25 1 1.6762 1.9622 -0.8770 26 1 1.7175 1.9471 0.9024 27 1 3.5324 -2.3680 -1.3422 28 1 4.1717 -0.8300 -0.6782 29 1 3.7635 -2.1039 1.3310 30 1 2.2770 -2.8426 0.6571 31 1 3.3179 -0.3755 2.9390 32 1 3.7774 0.5210 1.4715 33 1 2.3532 1.0247 2.4129 34 1 2.5504 -2.6901 4.4228 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238208853.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:57 Heat of formation + Delta-G solvation = -11.770865 kcal Electronic energy + Delta-G solvation = -16132.366453 eV Core-core repulsion = 13644.909780 eV Total energy + Delta-G solvation = -2487.456673 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.43257 -38.52100 -35.05255 -32.40557 -31.40685 -29.09500 -27.52065 -24.44766 -24.25882 -22.60334 -20.25881 -19.08711 -17.73984 -16.26450 -15.67054 -15.36381 -15.26183 -14.90622 -14.07476 -13.58683 -12.79541 -12.64086 -12.18810 -11.91387 -11.72268 -11.49555 -11.04682 -10.90653 -10.88064 -10.47176 -10.38496 -10.27820 -10.11998 -9.70761 -9.62207 -9.33395 -9.08405 -8.77031 -8.43528 -8.33663 -5.97862 -4.03836 1.48685 2.53697 3.27455 3.37013 3.39383 3.64943 4.42072 5.23897 5.30581 5.40487 5.53507 5.78921 6.05344 6.10196 6.22145 6.34172 6.42203 6.51490 6.56473 6.64360 6.72517 6.83274 6.92004 6.98850 7.07903 7.21034 7.25405 7.37488 7.57068 7.80542 7.91640 8.20623 8.34600 8.48597 8.96061 9.61491 11.06128 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039031 B = 0.008862 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.210899 B = 3158.751198 C = 3308.580561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.118 4.118 4 C 0.132 3.868 5 H 0.069 0.931 6 N -0.525 5.525 7 C 0.593 3.407 8 O -0.395 6.395 9 C -0.123 4.123 10 C -0.088 4.088 11 C 0.082 3.918 12 C -0.130 4.130 13 C -0.514 4.514 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.884 3.116 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.286 1.286 21 H 0.066 0.934 22 H 0.019 0.981 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.013 0.987 33 H 0.027 0.973 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 2.361 -6.335 6.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.057 4.057 3 C -0.176 4.176 4 C 0.032 3.968 5 H 0.087 0.913 6 N -0.275 5.275 7 C 0.287 3.713 8 O -0.255 6.255 9 C -0.161 4.161 10 C -0.126 4.126 11 C 0.082 3.918 12 C -0.187 4.187 13 C -0.552 4.552 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.712 3.288 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.213 1.213 21 H 0.084 0.916 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.460 2.604 -6.394 6.919 hybrid contribution -1.106 -0.611 0.246 1.287 sum -0.646 1.993 -6.148 6.495 Atomic orbital electron populations 1.21910 0.95212 1.01302 0.99590 1.21456 0.95028 0.95394 0.93787 1.21727 1.00868 0.95349 0.99615 1.22719 0.98177 0.89462 0.86413 0.91323 1.68771 1.29717 1.31679 0.97335 1.27177 0.78517 0.76170 0.89424 1.90947 1.51491 1.61847 1.21186 1.22799 0.96005 0.98081 0.99222 1.22341 1.00109 0.99496 0.90695 1.18636 0.93523 0.90462 0.89203 1.21944 0.97107 0.98398 1.01299 1.21614 0.93037 1.33928 1.06646 0.91000 1.24949 0.95163 0.96082 0.97415 1.69902 1.18222 1.40619 1.23619 0.86670 0.83147 0.78502 0.80453 1.19906 1.21266 1.21252 0.91555 0.96163 0.92157 0.92599 0.94644 0.92928 0.92934 0.91126 0.91515 0.92589 0.89960 0.96834 0.95395 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 6.86 37.15 0.25 -2.01 16 2 C -0.06 -1.06 0.91 -153.39 -0.14 -1.20 16 3 C -0.12 -2.11 6.50 37.16 0.24 -1.87 16 4 C 0.13 2.28 2.94 -66.27 -0.19 2.08 16 5 H 0.07 1.14 7.60 -51.93 -0.39 0.75 16 6 N -0.52 -8.42 8.40 -21.60 -0.18 -8.60 16 7 C 0.59 8.96 16.63 49.98 0.83 9.79 16 8 O -0.40 -6.32 17.99 5.96 0.11 -6.21 16 9 C -0.12 -2.16 6.58 -24.74 -0.16 -2.32 16 10 C -0.09 -1.85 4.99 -25.07 -0.13 -1.98 16 11 C 0.08 1.80 0.62 -154.54 -0.10 1.70 16 12 C -0.13 -2.89 6.96 37.16 0.26 -2.63 16 13 C -0.51 -12.55 6.98 -34.44 -0.24 -12.79 16 14 H 0.07 1.73 4.66 -52.49 -0.24 1.48 16 15 C 0.07 1.66 5.18 -17.82 -0.09 1.56 16 16 N -0.89 -23.20 10.39 55.43 0.58 -22.62 16 17 Si 0.88 20.15 29.54 -169.99 -5.02 15.13 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 21 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 1.14 7.08 -51.93 -0.37 0.77 16 24 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 25 H 0.03 0.59 7.52 -51.93 -0.39 0.20 16 26 H 0.05 0.95 6.76 -51.93 -0.35 0.60 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.51 7.68 -51.93 -0.40 1.11 16 30 H 0.06 1.25 7.85 -51.93 -0.41 0.84 16 31 H 0.08 2.04 5.98 -51.93 -0.31 1.73 16 32 H 0.01 0.26 6.70 -51.93 -0.35 -0.08 16 33 H 0.03 0.60 6.78 -51.93 -0.35 0.25 16 34 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 267.94 15.07 4.04 4.04 Total: -1.00 -24.94 267.94 -4.63 -29.57 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.69 Total: -1.65 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 0.54 Total: -9.66 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.39 Total: -31.22 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: 0.11 Total: -6.21 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -24.94 -4.63 -29.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238208853.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.800 kcal (2) G-P(sol) polarization free energy of solvation -24.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds