Wall clock time and date at job start Mon Mar 30 2020 03:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.05858 * 2 1 4 4 C 1.54272 * 110.03314 * 238.58121 * 2 1 3 5 5 H 1.09005 * 110.48312 * 335.78678 * 4 2 1 6 6 N 1.46501 * 110.48485 * 98.42888 * 4 2 1 7 7 C 1.24995 * 119.99826 * 240.00504 * 6 4 2 8 8 O 4.48932 * 87.13769 * 270.91574 * 2 1 3 9 9 C 1.54881 * 104.19817 * 217.11013 * 4 2 1 10 10 C 1.54895 * 102.75094 * 37.94045 * 9 4 2 11 11 C 1.53881 * 110.03103 * 121.41711 * 2 1 3 12 12 C 1.52997 * 110.03192 * 238.61446 * 11 2 1 13 13 C 1.50701 * 110.03197 * 0.02562 * 11 2 1 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 2 15 15 C 1.37871 * 119.99694 * 180.27875 * 13 11 2 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 H 1.09003 * 109.47310 * 298.58467 * 1 2 3 22 22 H 1.09002 * 109.46844 * 58.58169 * 1 2 3 23 23 H 1.08996 * 109.47558 * 178.58573 * 1 2 3 24 24 H 1.09003 * 109.46858 * 181.41405 * 3 2 1 25 25 H 1.08997 * 109.47023 * 301.41343 * 3 2 1 26 26 H 1.08999 * 109.47110 * 61.41885 * 3 2 1 27 27 H 1.08998 * 110.76122 * 156.25522 * 9 4 2 28 28 H 1.09006 * 110.75300 * 279.44326 * 9 4 2 29 29 H 1.08997 * 110.48784 * 203.38058 * 10 9 4 30 30 H 1.08996 * 110.48252 * 80.73717 * 10 9 4 31 31 H 1.08999 * 109.47197 * 180.69395 * 12 11 2 32 32 H 1.09002 * 109.47047 * 300.69301 * 12 11 2 33 33 H 1.08993 * 109.47161 * 60.69285 * 12 11 2 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 1 1.3141 -1.4661 -1.5966 6 7 2.4230 0.1878 -2.2968 7 6 1.8549 0.1287 -3.4086 8 8 1.3058 0.0717 -4.4831 9 6 3.3135 -1.5009 -0.7191 10 6 2.8873 -1.9408 0.7036 11 6 2.0570 -0.7536 1.2338 12 6 2.9399 0.1706 2.0748 13 6 0.9037 -1.2597 2.0612 14 1 -0.1116 -1.0677 1.7469 15 6 1.1446 -1.9625 3.2226 16 7 2.3809 -2.1960 3.6055 17 14 -0.2850 -2.5831 4.2524 18 1 -1.5650 -2.1916 3.6093 19 1 -0.2149 -4.0629 4.3559 20 1 -0.2118 -1.9879 5.6109 21 1 -0.3634 0.4917 0.9024 22 1 -0.3633 0.5357 -0.8770 23 1 -0.3634 -1.0273 -0.0254 24 1 3.1444 1.4261 -0.0254 25 1 1.6762 1.9622 -0.8770 26 1 1.7175 1.9471 0.9024 27 1 3.5324 -2.3680 -1.3422 28 1 4.1717 -0.8300 -0.6782 29 1 3.7635 -2.1039 1.3310 30 1 2.2770 -2.8426 0.6571 31 1 3.3179 -0.3755 2.9390 32 1 3.7774 0.5210 1.4715 33 1 2.3532 1.0247 2.4129 34 1 2.5504 -2.6901 4.4228 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238208853.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:57 Heat of formation + Delta-G solvation = -25.676900 kcal Electronic energy + Delta-G solvation = -16132.969464 eV Core-core repulsion = 13644.909780 eV Total energy + Delta-G solvation = -2488.059684 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92187 -39.82829 -36.48470 -34.18290 -32.92430 -30.75507 -29.12957 -26.06031 -25.94642 -24.19892 -21.70161 -20.52933 -19.35479 -17.61881 -17.25413 -16.80200 -16.69787 -16.56547 -15.60081 -15.24536 -14.43525 -14.14728 -13.72249 -13.55379 -13.31655 -13.16985 -12.74068 -12.59776 -12.50794 -12.13728 -11.91039 -11.90467 -11.63616 -11.44996 -11.05847 -10.98853 -10.69792 -10.28795 -10.23815 -10.10363 -7.90643 -5.99847 0.24581 1.31596 1.44002 1.50065 1.56483 2.38896 2.53247 3.35295 3.85857 3.91181 4.12223 4.39008 4.60402 4.64963 4.75669 4.84676 4.98682 5.00188 5.09884 5.12754 5.16657 5.22466 5.31309 5.42913 5.54138 5.58574 5.65140 5.73522 5.79902 5.92127 6.16954 6.37614 6.61895 7.07263 7.11996 7.66944 9.11493 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039031 B = 0.008862 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.210899 B = 3158.751198 C = 3308.580561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.111 4.111 4 C 0.140 3.860 5 H 0.079 0.921 6 N -0.529 5.529 7 C 0.616 3.384 8 O -0.399 6.399 9 C -0.112 4.112 10 C -0.082 4.082 11 C 0.071 3.929 12 C -0.120 4.120 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.021 3.979 16 N -0.908 5.908 17 Si 0.932 3.068 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.292 1.292 21 H 0.052 0.948 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 2.837 -7.981 8.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.168 4.168 4 C 0.039 3.961 5 H 0.097 0.903 6 N -0.279 5.279 7 C 0.310 3.690 8 O -0.258 6.258 9 C -0.150 4.150 10 C -0.121 4.121 11 C 0.071 3.929 12 C -0.177 4.177 13 C -0.555 4.555 14 H 0.092 0.908 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.760 3.240 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.218 1.218 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.043 3.087 -8.059 8.630 hybrid contribution -0.960 -0.736 0.727 1.411 sum -1.003 2.352 -7.331 7.764 Atomic orbital electron populations 1.21815 0.94792 1.00975 0.99942 1.21380 0.95386 0.95817 0.93286 1.21632 1.00634 0.94636 0.99873 1.22481 0.97958 0.89425 0.86214 0.90333 1.68681 1.30143 1.31749 0.97373 1.26840 0.77744 0.75451 0.88947 1.90968 1.51482 1.61870 1.21436 1.22667 0.96264 0.99010 0.97065 1.22119 0.98690 0.98508 0.92777 1.18704 0.92908 0.91020 0.90303 1.21800 0.97564 0.97867 1.00494 1.22004 0.94045 1.32863 1.06619 0.90833 1.25520 0.96640 0.96904 0.98678 1.70031 1.19404 1.41553 1.23801 0.85913 0.81422 0.77640 0.79018 1.19293 1.21627 1.21823 0.92913 0.93968 0.92908 0.92831 0.93236 0.93713 0.90778 0.90810 0.93868 0.94432 0.92925 0.95325 0.95823 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 6.86 71.98 0.49 -3.62 16 2 C -0.06 -2.08 0.91 -51.46 -0.05 -2.13 16 3 C -0.11 -3.70 6.50 71.98 0.47 -3.23 16 4 C 0.14 4.42 2.94 46.07 0.14 4.56 16 5 H 0.08 2.36 7.60 -2.38 -0.02 2.34 16 6 N -0.53 -15.18 8.40 -333.67 -2.80 -17.98 16 7 C 0.62 16.44 16.63 131.22 2.18 18.62 16 8 O -0.40 -11.42 17.99 -1.60 -0.03 -11.45 16 9 C -0.11 -3.69 6.58 31.88 0.21 -3.48 16 10 C -0.08 -3.44 4.99 31.67 0.16 -3.28 16 11 C 0.07 3.07 0.62 -52.20 -0.03 3.04 16 12 C -0.12 -5.32 6.96 71.98 0.50 -4.82 16 13 C -0.52 -25.15 6.98 25.60 0.18 -24.97 16 14 H 0.07 3.49 4.66 -2.91 -0.01 3.48 16 15 C 0.02 1.08 5.18 84.65 0.44 1.52 16 16 N -0.91 -48.57 10.39 21.45 0.22 -48.35 16 17 Si 0.93 41.60 29.54 68.60 2.03 43.62 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H 0.05 1.95 7.11 -2.39 -0.02 1.94 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.89 7.08 -2.39 -0.02 1.87 16 24 H 0.05 1.80 6.72 -2.39 -0.02 1.78 16 25 H 0.05 1.51 7.52 -2.39 -0.02 1.49 16 26 H 0.04 1.55 6.76 -2.39 -0.02 1.53 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.04 1.97 7.68 -2.39 -0.02 1.96 16 30 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 31 H 0.05 2.66 5.98 -2.39 -0.01 2.64 16 32 H 0.03 1.14 6.70 -2.39 -0.02 1.12 16 33 H 0.02 1.02 6.78 -2.39 -0.02 1.00 16 34 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -51.82 267.94 5.20 -46.63 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.09 Total: 5.31 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.68 Total: -17.79 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -2.58 Total: -66.33 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.03 Total: -11.45 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -51.82 5.20 -46.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238208853.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.952 kcal (2) G-P(sol) polarization free energy of solvation -51.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds