Wall clock time and date at job start Mon Mar 30 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.01622 * 2 1 4 4 C 1.54463 * 109.86085 * 238.55903 * 2 1 3 5 5 H 1.09003 * 110.40626 * 145.51343 * 4 2 1 6 6 N 1.46505 * 110.65957 * 22.81169 * 4 2 1 7 7 C 1.25004 * 119.99615 * 123.78766 * 6 4 2 8 8 O 4.53140 * 90.57932 * 271.23477 * 2 1 3 9 9 C 1.54890 * 104.10368 * 264.10318 * 4 2 1 10 10 C 1.54887 * 102.91108 * 322.30112 * 9 4 2 11 11 C 1.53877 * 110.03252 * 121.39001 * 2 1 3 12 12 C 1.52993 * 110.07135 * 359.97438 * 11 2 1 13 13 C 1.50704 * 110.03377 * 238.57097 * 11 2 1 14 14 H 1.08004 * 119.99761 * 1.38143 * 13 11 2 15 15 C 1.37876 * 119.99856 * 181.37915 * 13 11 2 16 16 N 1.31516 * 120.00048 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99587 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46983 * 60.00282 * 17 15 13 19 19 H 1.48507 * 109.46915 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47415 * 300.00182 * 17 15 13 21 21 H 1.08997 * 109.47535 * 298.60845 * 1 2 3 22 22 H 1.08999 * 109.47015 * 58.60961 * 1 2 3 23 23 H 1.09005 * 109.47102 * 178.60688 * 1 2 3 24 24 H 1.09001 * 109.47282 * 181.38752 * 3 2 1 25 25 H 1.08999 * 109.47360 * 301.39142 * 3 2 1 26 26 H 1.09000 * 109.46796 * 61.39150 * 3 2 1 27 27 H 1.09002 * 110.75897 * 203.89231 * 9 4 2 28 28 H 1.09006 * 110.75292 * 80.70460 * 9 4 2 29 29 H 1.09004 * 110.48468 * 156.53190 * 10 9 4 30 30 H 1.09004 * 110.48634 * 279.03637 * 10 9 4 31 31 H 1.09007 * 109.47115 * 178.64251 * 12 11 2 32 32 H 1.08997 * 109.47220 * 298.64107 * 12 11 2 33 33 H 1.09005 * 109.47260 * 58.64497 * 12 11 2 34 34 H 0.97001 * 119.99601 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0547 -0.7578 -1.2395 5 1 2.9759 -0.3015 -1.6021 6 7 1.0419 -0.7819 -2.2977 7 6 1.3135 -0.3346 -3.4330 8 8 1.5758 0.0976 -4.5301 9 6 2.3281 -2.1905 -0.7181 10 6 2.8874 -1.9403 0.7044 11 6 2.0571 -0.7530 1.2341 12 6 0.8869 -1.2658 2.0757 13 6 2.9275 0.1574 2.0615 14 1 3.0774 1.1832 1.7587 15 6 3.5326 -0.3193 3.2050 16 7 3.3505 -1.5686 3.5735 17 14 4.6121 0.8090 4.2302 18 1 3.8099 1.9654 4.7041 19 1 5.1410 0.0607 5.3988 20 1 5.7439 1.2977 3.4025 21 1 -0.3634 0.4920 0.9021 22 1 -0.3633 0.5353 -0.8772 23 1 -0.3633 -1.0274 -0.0250 24 1 3.1433 1.4273 -0.0249 25 1 1.6751 1.9622 -0.8772 26 1 1.7157 1.9473 0.9022 27 1 3.0676 -2.6937 -1.3411 28 1 1.4048 -2.7682 -0.6741 29 1 2.7402 -2.8191 1.3322 30 1 3.9446 -1.6786 0.6581 31 1 1.2708 -1.8178 2.9337 32 1 0.2920 -0.4213 2.4237 33 1 0.2641 -1.9237 1.4695 34 1 3.7765 -1.9040 4.3778 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238236325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:59 Heat of formation + Delta-G solvation = -25.932898 kcal Electronic energy + Delta-G solvation = -16125.301370 eV Core-core repulsion = 13637.230586 eV Total energy + Delta-G solvation = -2488.070784 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90161 -39.83130 -36.48467 -34.18141 -32.91184 -30.76626 -29.11614 -26.05492 -25.93835 -24.19555 -21.71471 -20.52385 -19.34956 -17.61335 -17.24353 -16.79270 -16.68951 -16.57903 -15.59208 -15.24459 -14.42575 -14.14064 -13.72012 -13.55517 -13.31425 -13.16355 -12.71680 -12.60330 -12.52234 -12.18048 -11.90781 -11.88824 -11.63123 -11.44858 -11.06199 -10.97479 -10.68125 -10.29658 -10.23370 -10.10834 -7.90707 -5.99464 0.24477 1.31475 1.47039 1.49947 1.53842 2.38603 2.53628 3.35748 3.85687 3.91321 4.12593 4.38589 4.61115 4.65028 4.75930 4.84929 4.98615 5.00957 5.09992 5.12589 5.17036 5.22468 5.31722 5.43137 5.54566 5.58891 5.65623 5.73861 5.79486 5.92322 6.17025 6.35952 6.61728 7.07189 7.12037 7.67109 9.11734 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039009 B = 0.008821 C = 0.008460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.606079 B = 3173.615918 C = 3308.706855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.056 4.056 3 C -0.118 4.118 4 C 0.140 3.860 5 H 0.078 0.922 6 N -0.529 5.529 7 C 0.616 3.384 8 O -0.399 6.399 9 C -0.114 4.114 10 C -0.081 4.081 11 C 0.072 3.928 12 C -0.118 4.118 13 C -0.520 4.520 14 H 0.073 0.927 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.932 3.068 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.276 1.276 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 1.314 -7.912 8.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 C -0.175 4.175 4 C 0.039 3.961 5 H 0.096 0.904 6 N -0.279 5.279 7 C 0.311 3.689 8 O -0.257 6.257 9 C -0.152 4.152 10 C -0.119 4.119 11 C 0.071 3.929 12 C -0.176 4.176 13 C -0.558 4.558 14 H 0.091 0.909 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.760 3.240 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.201 1.201 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.982 1.130 -7.982 8.596 hybrid contribution 1.050 0.630 0.692 1.406 sum -1.932 1.760 -7.290 7.744 Atomic orbital electron populations 1.21634 0.94028 1.01237 0.99894 1.21389 0.96019 0.95174 0.93118 1.21812 1.00498 0.95233 0.99970 1.22496 0.88608 0.98621 0.86366 0.90378 1.68675 1.28084 1.35172 0.96006 1.26841 0.69605 0.83373 0.89126 1.90967 1.51876 1.63636 1.19267 1.22695 1.01182 0.94168 0.97157 1.22098 0.98209 0.98938 0.92693 1.18691 0.92064 0.91832 0.90300 1.21785 0.97023 0.98468 1.00282 1.21942 1.27757 0.98302 1.07779 0.90867 1.25519 0.97772 0.95787 0.98607 1.70033 1.44694 1.15200 1.24837 0.86033 0.79847 0.79508 0.78642 1.20407 1.22092 1.20108 0.93738 0.93160 0.92855 0.92936 0.93902 0.92884 0.90849 0.90822 0.93857 0.94540 0.93248 0.95764 0.95227 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.70 6.49 71.98 0.47 -3.23 16 2 C -0.06 -2.02 0.92 -51.39 -0.05 -2.07 16 3 C -0.12 -4.10 6.87 71.98 0.49 -3.60 16 4 C 0.14 4.43 2.95 46.13 0.14 4.56 16 5 H 0.08 2.35 7.61 -2.39 -0.02 2.33 16 6 N -0.53 -15.18 8.41 -333.36 -2.80 -17.98 16 7 C 0.62 16.41 16.62 131.22 2.18 18.60 16 8 O -0.40 -11.39 17.99 -1.58 -0.03 -11.42 16 9 C -0.11 -3.77 6.57 31.88 0.21 -3.56 16 10 C -0.08 -3.39 4.91 31.67 0.16 -3.23 16 11 C 0.07 3.09 0.62 -52.20 -0.03 3.06 16 12 C -0.12 -5.24 6.96 71.98 0.50 -4.74 16 13 C -0.52 -25.30 6.98 25.60 0.18 -25.12 16 14 H 0.07 3.47 4.66 -2.91 -0.01 3.45 16 15 C 0.02 1.12 5.17 84.65 0.44 1.56 16 16 N -0.91 -48.63 10.39 21.45 0.22 -48.40 16 17 Si 0.93 41.58 29.54 68.60 2.03 43.61 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 21 H 0.04 1.53 6.78 -2.39 -0.02 1.52 16 22 H 0.05 1.53 7.52 -2.39 -0.02 1.51 16 23 H 0.05 1.79 6.71 -2.38 -0.02 1.77 16 24 H 0.05 1.88 7.11 -2.39 -0.02 1.86 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.96 7.09 -2.39 -0.02 1.94 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.04 1.99 7.63 -2.38 -0.02 1.97 16 30 H 0.04 1.63 7.85 -2.38 -0.02 1.61 16 31 H 0.05 2.49 6.12 -2.38 -0.01 2.47 16 32 H 0.02 1.04 6.83 -2.39 -0.02 1.03 16 33 H 0.03 1.17 6.66 -2.38 -0.02 1.16 16 34 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -51.79 268.00 5.19 -46.59 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.09 Total: 5.37 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 4.68 Total: -17.77 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -2.58 Total: -66.38 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.03 Total: -11.42 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -51.79 5.19 -46.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238236325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.661 kcal (2) G-P(sol) polarization free energy of solvation -51.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds