Wall clock time and date at job start Mon Mar 30 2020 03:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46980 * 273.07137 * 3 2 1 5 5 C 1.52997 * 109.47050 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.53958 * 307.61689 * 5 4 3 7 7 C 1.54891 * 110.48440 * 70.22435 * 5 4 3 8 8 C 1.54888 * 102.75030 * 156.61886 * 7 5 4 9 9 O 1.42896 * 110.49267 * 203.38007 * 8 7 5 10 10 C 1.54268 * 104.19568 * 322.06264 * 8 7 5 11 11 C 1.53877 * 106.59907 * 23.60221 * 10 8 7 12 12 H 1.08996 * 110.03749 * 240.66700 * 11 10 8 13 13 C 1.52999 * 110.02896 * 119.28892 * 11 10 8 14 14 C 1.50702 * 109.47525 * 66.45354 * 13 11 10 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 H 1.09000 * 109.46532 * 153.07349 * 3 2 1 23 23 H 1.08996 * 109.47121 * 33.07281 * 3 2 1 24 24 H 1.08999 * 109.46849 * 60.00081 * 4 3 2 25 25 H 1.09001 * 109.46728 * 300.00422 * 4 3 2 26 26 H 1.09007 * 110.75560 * 38.30973 * 7 5 4 27 27 H 1.08997 * 110.92101 * 275.00910 * 7 5 4 28 28 H 1.08998 * 110.59805 * 80.79263 * 8 7 5 29 29 H 0.96697 * 114.00703 * 176.22915 * 9 8 7 30 30 H 1.09006 * 110.03098 * 264.32386 * 10 8 7 31 31 H 1.08996 * 110.07557 * 142.91462 * 10 8 7 32 32 H 1.09009 * 109.47378 * 306.45634 * 13 11 10 33 33 H 1.08998 * 109.47458 * 186.46095 * 13 11 10 34 34 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0764 1.4405 5 6 4.6480 -0.0764 1.4404 6 1 5.0304 -0.8504 0.7751 7 6 5.1900 1.3133 1.0232 8 6 6.6086 1.3277 1.6448 9 8 7.0555 2.6708 1.8404 10 6 6.4345 0.6137 3.0012 11 6 5.1879 -0.2790 2.8712 12 1 4.4359 0.0213 3.6009 13 6 5.5687 -1.7453 3.0849 14 6 6.0103 -1.9470 4.5116 15 1 6.0180 -1.1127 5.1975 16 6 6.4043 -3.1964 4.9412 17 7 6.3944 -4.2124 4.1062 18 14 6.9588 -3.4447 6.7077 19 1 7.3341 -4.8667 6.9135 20 1 8.1324 -2.5779 6.9846 21 1 5.8507 -3.0868 7.6293 22 1 2.9708 0.9171 -0.4654 23 1 2.9717 -0.8603 -0.5608 24 1 2.7551 -0.9928 1.9058 25 1 2.7542 0.7846 2.0012 26 1 4.5759 2.1097 1.4438 27 1 5.2429 1.4006 -0.0620 28 1 7.3095 0.7816 1.0135 29 1 7.9140 2.7397 2.2800 30 1 6.2871 1.3477 3.7934 31 1 7.3107 0.0023 3.2173 32 1 6.3837 -2.0110 2.4114 33 1 4.7060 -2.3786 2.8786 34 1 6.1061 -4.0835 3.1890 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238647335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:24 Heat of formation + Delta-G solvation = -65.799579 kcal Electronic energy + Delta-G solvation = -15106.323162 eV Core-core repulsion = 12616.523628 eV Total energy + Delta-G solvation = -2489.799534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.01837 -36.85873 -35.65123 -33.66078 -32.33819 -29.57760 -27.70776 -25.57106 -23.39436 -21.95665 -20.09206 -19.39201 -17.40689 -16.78055 -16.51118 -15.43271 -15.00858 -14.73297 -13.74115 -13.70493 -13.31564 -12.99868 -12.83120 -12.70161 -12.28368 -12.13310 -11.61902 -11.42970 -11.28551 -11.07383 -10.70743 -10.61011 -10.28914 -10.22843 -10.11509 -10.04126 -9.48761 -9.36368 -8.50709 -8.33819 -6.36600 -4.05776 2.75165 2.78113 3.42498 3.43854 3.62597 3.98779 4.39402 4.52875 4.88210 4.91898 5.06198 5.21165 5.35386 5.40447 5.42747 5.61672 5.77770 5.81751 5.94672 6.00647 6.10201 6.19657 6.29131 6.31343 6.53731 6.76248 6.81643 7.00968 7.37174 7.51677 7.55598 7.84747 8.21057 8.45771 8.88313 9.65822 11.03811 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.007516 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.260310 B = 3724.600279 C = 4768.319412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.212 3.788 3 C -0.029 4.029 4 C -0.105 4.105 5 C -0.090 4.090 6 H 0.080 0.920 7 C -0.111 4.111 8 C 0.093 3.907 9 O -0.573 6.573 10 C -0.141 4.141 11 C -0.069 4.069 12 H 0.063 0.937 13 C 0.016 3.984 14 C -0.598 4.598 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.914 5.914 18 Si 1.065 2.935 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.289 1.289 22 H 0.107 0.893 23 H 0.109 0.891 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.375 0.625 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 9.779 -6.853 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.106 4.106 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.108 4.108 6 H 0.098 0.902 7 C -0.148 4.148 8 C 0.034 3.966 9 O -0.378 6.378 10 C -0.179 4.179 11 C -0.087 4.087 12 H 0.081 0.919 13 C -0.021 4.021 14 C -0.636 4.636 15 H 0.066 0.934 16 C -0.189 4.189 17 N -0.551 5.551 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 H 0.125 0.875 23 H 0.127 0.873 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.700 8.765 -6.078 10.801 hybrid contribution 0.446 0.961 -0.714 1.278 sum -1.254 9.727 -6.792 11.930 Atomic orbital electron populations 1.81198 1.13269 1.09346 1.08940 1.29406 0.95497 0.92786 0.92867 1.19463 0.81080 1.05575 1.00819 1.21581 0.95851 1.03618 0.93341 1.22103 0.93323 0.96229 0.99181 0.90170 1.22555 0.94953 0.97685 0.99635 1.22819 0.95445 0.81855 0.96453 1.86438 1.41059 1.27656 1.82685 1.22832 1.00497 0.98597 0.95984 1.21639 0.95586 0.98218 0.93297 0.91880 1.19344 0.95503 0.89993 0.97284 1.22042 1.48302 0.97084 0.96178 0.93394 1.25789 0.94988 0.92522 1.05627 1.70794 1.44868 1.32777 1.06643 0.83594 0.76367 0.76087 0.74594 1.20838 1.21519 1.21522 0.87495 0.87301 0.90504 0.91148 0.90773 0.91651 0.92491 0.77860 0.92111 0.90543 0.97451 0.97474 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.87 18.54 42.15 0.78 -6.09 16 2 C 0.21 2.59 15.43 -20.76 -0.32 2.27 16 3 C -0.03 -0.27 5.58 -29.52 -0.16 -0.43 16 4 C -0.11 -1.25 4.52 -26.73 -0.12 -1.37 16 5 C -0.09 -1.23 2.39 -88.96 -0.21 -1.44 16 6 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 7 C -0.11 -1.39 5.38 -24.74 -0.13 -1.52 16 8 C 0.09 1.31 4.23 -25.07 -0.11 1.21 16 9 O -0.57 -7.79 13.38 -35.23 -0.47 -8.26 16 10 C -0.14 -2.41 5.80 -25.61 -0.15 -2.56 16 11 C -0.07 -1.25 2.46 -89.50 -0.22 -1.47 16 12 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 13 C 0.02 0.37 3.44 -27.88 -0.10 0.27 16 14 C -0.60 -16.11 8.40 -34.44 -0.29 -16.40 16 15 H 0.05 1.28 7.68 -52.49 -0.40 0.88 16 16 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 17 N -0.91 -27.26 13.65 55.43 0.76 -26.50 16 18 Si 1.06 24.78 29.90 -169.99 -5.08 19.69 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.11 0.75 7.56 -51.93 -0.39 0.36 16 23 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 26 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 27 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.37 3.72 9.11 45.56 0.42 4.13 16 30 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.08 1.46 7.36 -51.93 -0.38 1.08 16 32 H 0.01 0.18 8.01 -51.92 -0.42 -0.24 16 33 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 34 H 0.27 7.90 7.22 -40.82 -0.29 7.61 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -31.97 287.05 -6.03 -38.00 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.43 Total: -0.02 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.91 Total: -21.15 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 1.54 Total: -32.59 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.47 Total: -8.26 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.97 -6.03 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238647335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.800 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds