Wall clock time and date at job start Mon Mar 30 2020 03:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46980 * 273.07137 * 3 2 1 5 5 C 1.52997 * 109.47050 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.53958 * 307.61689 * 5 4 3 7 7 C 1.54891 * 110.48440 * 70.22435 * 5 4 3 8 8 C 1.54888 * 102.75030 * 156.61886 * 7 5 4 9 9 O 1.42896 * 110.49267 * 203.38007 * 8 7 5 10 10 C 1.54268 * 104.19568 * 322.06264 * 8 7 5 11 11 C 1.53877 * 106.59907 * 23.60221 * 10 8 7 12 12 H 1.08996 * 110.03749 * 240.66700 * 11 10 8 13 13 C 1.52999 * 110.02896 * 119.28892 * 11 10 8 14 14 C 1.50702 * 109.47525 * 66.45354 * 13 11 10 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 H 1.09000 * 109.46532 * 153.07349 * 3 2 1 23 23 H 1.08996 * 109.47121 * 33.07281 * 3 2 1 24 24 H 1.08999 * 109.46849 * 60.00081 * 4 3 2 25 25 H 1.09001 * 109.46728 * 300.00422 * 4 3 2 26 26 H 1.09007 * 110.75560 * 38.30973 * 7 5 4 27 27 H 1.08997 * 110.92101 * 275.00910 * 7 5 4 28 28 H 1.08998 * 110.59805 * 80.79263 * 8 7 5 29 29 H 0.96697 * 114.00703 * 176.22915 * 9 8 7 30 30 H 1.09006 * 110.03098 * 264.32386 * 10 8 7 31 31 H 1.08996 * 110.07557 * 142.91462 * 10 8 7 32 32 H 1.09009 * 109.47378 * 306.45634 * 13 11 10 33 33 H 1.08998 * 109.47458 * 186.46095 * 13 11 10 34 34 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0764 1.4405 5 6 4.6480 -0.0764 1.4404 6 1 5.0304 -0.8504 0.7751 7 6 5.1900 1.3133 1.0232 8 6 6.6086 1.3277 1.6448 9 8 7.0555 2.6708 1.8404 10 6 6.4345 0.6137 3.0012 11 6 5.1879 -0.2790 2.8712 12 1 4.4359 0.0213 3.6009 13 6 5.5687 -1.7453 3.0849 14 6 6.0103 -1.9470 4.5116 15 1 6.0180 -1.1127 5.1975 16 6 6.4043 -3.1964 4.9412 17 7 6.3944 -4.2124 4.1062 18 14 6.9588 -3.4447 6.7077 19 1 7.3341 -4.8667 6.9135 20 1 8.1324 -2.5779 6.9846 21 1 5.8507 -3.0868 7.6293 22 1 2.9708 0.9171 -0.4654 23 1 2.9717 -0.8603 -0.5608 24 1 2.7551 -0.9928 1.9058 25 1 2.7542 0.7846 2.0012 26 1 4.5759 2.1097 1.4438 27 1 5.2429 1.4006 -0.0620 28 1 7.3095 0.7816 1.0135 29 1 7.9140 2.7397 2.2800 30 1 6.2871 1.3477 3.7934 31 1 7.3107 0.0023 3.2173 32 1 6.3837 -2.0110 2.4114 33 1 4.7060 -2.3786 2.8786 34 1 6.1061 -4.0835 3.1890 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238647335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:24 Heat of formation + Delta-G solvation = -87.039580 kcal Electronic energy + Delta-G solvation = -15107.244197 eV Core-core repulsion = 12616.523628 eV Total energy + Delta-G solvation = -2490.720569 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23088 -37.87574 -36.83174 -35.43534 -33.65152 -31.11233 -28.82264 -27.21676 -25.00790 -23.36252 -21.29512 -20.69856 -18.70623 -18.34966 -17.75617 -16.49217 -16.14012 -15.89946 -15.62480 -14.84421 -14.69885 -14.42962 -14.29889 -13.84154 -13.64625 -13.38352 -12.96158 -12.78898 -12.60289 -12.33762 -12.31007 -11.98200 -11.76969 -11.52399 -11.44080 -11.36627 -10.99908 -10.71546 -10.47491 -10.44428 -8.61188 -6.30524 1.52683 1.59898 1.78709 1.78952 1.84432 2.58459 3.10508 3.21611 3.36508 3.77022 3.80624 4.09466 4.22830 4.30753 4.47624 4.59588 4.64345 4.75683 4.81783 4.87634 4.89690 5.01785 5.09088 5.23797 5.27722 5.35979 5.42870 5.48934 5.58891 5.75814 6.10740 6.27475 6.63115 6.68627 6.92958 7.49128 8.79886 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.007516 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.260310 B = 3724.600279 C = 4768.319412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.237 3.763 3 C -0.019 4.019 4 C -0.101 4.101 5 C -0.079 4.079 6 H 0.084 0.916 7 C -0.102 4.102 8 C 0.099 3.901 9 O -0.578 6.578 10 C -0.139 4.139 11 C -0.069 4.069 12 H 0.049 0.951 13 C 0.020 3.980 14 C -0.607 4.607 15 H 0.045 0.955 16 C -0.040 4.040 17 N -0.942 5.942 18 Si 1.109 2.891 19 H -0.286 1.286 20 H -0.270 1.270 21 H -0.274 1.274 22 H 0.143 0.857 23 H 0.133 0.867 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.390 0.610 30 H 0.057 0.943 31 H 0.047 0.953 32 H -0.008 1.008 33 H -0.012 1.012 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 11.387 -7.674 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.079 4.079 3 C -0.059 4.059 4 C -0.140 4.140 5 C -0.097 4.097 6 H 0.102 0.898 7 C -0.139 4.139 8 C 0.040 3.960 9 O -0.386 6.386 10 C -0.177 4.177 11 C -0.088 4.088 12 H 0.068 0.932 13 C -0.017 4.017 14 C -0.645 4.645 15 H 0.063 0.937 16 C -0.237 4.237 17 N -0.581 5.581 18 Si 0.932 3.068 19 H -0.211 1.211 20 H -0.195 1.195 21 H -0.199 1.199 22 H 0.161 0.839 23 H 0.150 0.850 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.239 0.761 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.010 0.990 33 H 0.006 0.994 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.223 10.402 -6.904 12.544 hybrid contribution 0.356 0.471 -0.416 0.722 sum -0.868 10.873 -7.319 13.136 Atomic orbital electron populations 1.81227 1.15203 1.11568 1.10759 1.29928 0.95922 0.90929 0.91148 1.19618 0.78761 1.08441 0.99071 1.21468 0.94557 1.02626 0.95395 1.21961 0.94328 0.97647 0.95794 0.89762 1.22555 0.93407 0.96261 1.01711 1.22745 0.96935 0.81907 0.94374 1.86409 1.42358 1.26948 1.82859 1.22765 0.98499 0.98138 0.98313 1.21546 0.96102 0.94708 0.96433 0.93243 1.19256 0.93917 0.93368 0.95138 1.22478 1.47274 0.96835 0.97881 0.93700 1.27211 0.94882 0.92671 1.08939 1.70919 1.46982 1.33624 1.06529 0.83022 0.77112 0.76150 0.70552 1.21140 1.19491 1.19919 0.83937 0.84962 0.92869 0.90910 0.90381 0.88105 0.91783 0.76127 0.92409 0.93430 0.98980 0.99420 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.14 18.54 20.01 0.37 -14.77 16 2 C 0.24 5.32 15.43 89.44 1.38 6.70 16 3 C -0.02 -0.28 5.58 28.79 0.16 -0.12 16 4 C -0.10 -2.21 4.52 30.59 0.14 -2.07 16 5 C -0.08 -1.99 2.39 -9.72 -0.02 -2.01 16 6 H 0.08 2.10 7.85 -2.39 -0.02 2.08 16 7 C -0.10 -2.15 5.38 31.89 0.17 -1.98 16 8 C 0.10 2.55 4.23 31.67 0.13 2.68 16 9 O -0.58 -14.00 13.38 -148.98 -1.99 -15.99 16 10 C -0.14 -4.67 5.80 31.32 0.18 -4.49 16 11 C -0.07 -2.51 2.46 -10.07 -0.02 -2.54 16 12 H 0.05 1.91 7.84 -2.39 -0.02 1.89 16 13 C 0.02 0.97 3.44 29.85 0.10 1.07 16 14 C -0.61 -33.36 8.40 25.60 0.21 -33.15 16 15 H 0.04 2.44 7.68 -2.91 -0.02 2.41 16 16 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 17 N -0.94 -57.48 13.65 21.45 0.29 -57.18 16 18 Si 1.11 49.92 29.90 68.60 2.05 51.97 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H 0.14 1.20 7.56 -2.39 -0.02 1.18 16 23 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.56 8.02 -2.39 -0.02 1.54 16 26 H 0.08 1.64 7.97 -2.38 -0.02 1.62 16 27 H 0.10 1.51 8.06 -2.39 -0.02 1.49 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.39 6.76 9.11 -74.06 -0.67 6.09 16 30 H 0.06 1.93 8.07 -2.38 -0.02 1.91 16 31 H 0.05 1.84 7.36 -2.39 -0.02 1.82 16 32 H -0.01 -0.41 8.01 -2.38 -0.02 -0.43 16 33 H -0.01 -0.64 8.00 -2.39 -0.02 -0.66 16 34 H 0.26 15.68 7.22 -92.70 -0.67 15.02 16 Total: -1.00 -71.06 287.05 4.13 -66.94 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.51 Total: 6.74 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 2.90 Total: -37.71 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: 0.66 Total: -71.95 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.99 Total: -15.99 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -71.06 4.13 -66.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238647335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.104 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds