Wall clock time and date at job start Mon Mar 30 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46780 * 230.50515 * 3 2 1 5 5 C 1.53003 * 109.46772 * 180.02562 * 4 3 2 6 6 H 1.08995 * 110.01908 * 306.38866 * 5 4 3 7 7 C 1.54270 * 110.03420 * 67.83529 * 5 4 3 8 8 C 1.54886 * 104.19509 * 142.89260 * 7 5 4 9 9 C 1.54883 * 102.75127 * 322.05883 * 8 7 5 10 10 H 1.09008 * 110.59476 * 279.21010 * 9 8 7 11 11 C 1.52996 * 110.48836 * 156.62363 * 9 8 7 12 12 C 1.50702 * 109.47159 * 70.22095 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53875 * 110.03193 * 184.99895 * 5 4 3 21 21 O 1.42902 * 110.03273 * 0.02562 * 20 5 4 22 22 H 1.08997 * 109.47242 * 110.50851 * 3 2 1 23 23 H 1.09000 * 109.47222 * 350.50311 * 3 2 1 24 24 H 1.08993 * 109.47415 * 60.00302 * 4 3 2 25 25 H 1.09003 * 109.47389 * 299.99481 * 4 3 2 26 26 H 1.09003 * 110.48215 * 261.57142 * 7 5 4 27 27 H 1.08995 * 110.48338 * 24.07768 * 7 5 4 28 28 H 1.09006 * 110.75147 * 203.74112 * 8 7 5 29 29 H 1.08994 * 110.75489 * 80.37592 * 8 7 5 30 30 H 1.09004 * 109.47066 * 310.22298 * 11 9 8 31 31 H 1.08994 * 109.47405 * 190.22128 * 11 9 8 32 32 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 33 33 H 1.09004 * 110.03139 * 121.43094 * 20 5 4 34 34 H 0.96698 * 113.99982 * 181.37282 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9183 1.1132 5 6 4.6475 0.9195 1.1127 6 1 5.0215 -0.1028 1.1680 7 6 5.1752 1.6081 -0.1629 8 6 6.4299 2.3810 0.3139 9 6 6.0036 2.8961 1.7110 10 1 5.3932 3.7945 1.6186 11 6 7.2336 3.1728 2.5779 12 6 7.9592 4.3830 2.0487 13 1 7.5807 4.9031 1.1811 14 6 9.1028 4.8301 2.6759 15 7 9.5635 4.1970 3.7326 16 14 9.9979 6.3347 2.0246 17 1 9.2812 6.8607 0.8351 18 1 10.0406 7.3800 3.0785 19 1 11.3832 5.9599 1.6427 20 6 5.1743 1.7385 2.3042 21 8 4.0805 2.2580 3.0630 22 1 2.9712 0.3608 -0.9625 23 1 2.9718 -1.0127 0.1696 24 1 2.7544 0.5582 2.0757 25 1 2.7538 1.9318 0.9436 26 1 5.4468 0.8652 -0.9129 27 1 4.4294 2.2960 -0.5613 28 1 6.6479 3.2137 -0.3549 29 1 7.2877 1.7133 0.3935 30 1 7.8988 2.3097 2.5508 31 1 6.9199 3.3577 3.6052 32 1 10.3683 4.5113 4.1737 33 1 5.8046 1.1138 2.9372 34 1 4.3477 2.8016 3.8167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238648464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:30 Heat of formation + Delta-G solvation = -60.601545 kcal Electronic energy + Delta-G solvation = -15064.504588 eV Core-core repulsion = 12574.930458 eV Total energy + Delta-G solvation = -2489.574130 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.04752 -36.81749 -34.74444 -33.96447 -32.44157 -29.71890 -27.52932 -25.81527 -23.23003 -22.24277 -19.74280 -19.04916 -17.52341 -17.06354 -15.93479 -15.40785 -14.77527 -14.34563 -14.16506 -13.59398 -13.55067 -13.18362 -12.72636 -12.33252 -12.27227 -11.97272 -11.66824 -11.31153 -11.14598 -11.01972 -10.88600 -10.59829 -10.40550 -10.26186 -10.18832 -9.71528 -9.43506 -9.20394 -8.85460 -8.39195 -6.04184 -4.06014 2.71127 2.73488 3.28118 3.36343 3.39928 3.94890 4.42581 4.66745 4.85438 4.90151 5.18748 5.23173 5.31976 5.35133 5.49262 5.79527 5.86442 5.88298 5.96550 6.06451 6.19269 6.32849 6.39288 6.42887 6.67217 6.81203 6.97175 7.04120 7.51263 7.58186 7.72913 7.94402 8.13409 8.38472 9.00634 9.58531 11.07003 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057746 B = 0.005308 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.762703 B = 5273.358524 C = 5450.831636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.213 3.787 3 C -0.032 4.032 4 C -0.093 4.093 5 C -0.083 4.083 6 H 0.077 0.923 7 C -0.126 4.126 8 C -0.106 4.106 9 C -0.114 4.114 10 H 0.070 0.930 11 C 0.028 3.972 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.103 3.897 21 O -0.572 6.572 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -7.339 -5.780 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.105 4.105 3 C -0.072 4.072 4 C -0.132 4.132 5 C -0.102 4.102 6 H 0.096 0.904 7 C -0.163 4.163 8 C -0.143 4.143 9 C -0.133 4.133 10 H 0.088 0.912 11 C -0.009 4.009 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.044 3.956 21 O -0.378 6.378 22 H 0.125 0.875 23 H 0.124 0.876 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.442 -7.671 -6.109 13.613 hybrid contribution 1.507 1.185 0.186 1.926 sum -7.935 -6.487 -5.923 11.837 Atomic orbital electron populations 1.81199 1.13296 1.09207 1.09177 1.29404 0.95497 0.92788 0.92779 1.19522 0.81122 1.03540 1.03061 1.21312 0.95331 0.99514 0.97023 1.21819 0.94313 0.99035 0.94986 0.90430 1.22568 0.98592 0.99065 0.96089 1.22335 0.96028 0.99133 0.96834 1.22770 0.98309 0.96371 0.95815 0.91206 1.19162 0.90884 0.96834 0.94036 1.21249 1.09068 1.12005 1.12956 0.92620 1.25021 0.97436 0.97020 0.95000 1.69966 1.23002 1.40269 1.20343 0.86579 0.79666 0.83092 0.78930 1.19747 1.21078 1.21055 1.22630 0.86721 0.94700 0.91516 1.86370 1.34432 1.71271 1.45742 0.87472 0.87620 0.90669 0.90707 0.92021 0.91710 0.91720 0.91598 0.96453 0.96946 0.93080 0.92649 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.46 18.54 42.15 0.78 -5.68 16 2 C 0.21 2.39 15.43 -20.76 -0.32 2.07 16 3 C -0.03 -0.26 5.56 -29.52 -0.16 -0.42 16 4 C -0.09 -1.00 3.57 -26.73 -0.10 -1.09 16 5 C -0.08 -1.00 2.93 -89.50 -0.26 -1.26 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.13 -1.52 5.53 -25.07 -0.14 -1.66 16 8 C -0.11 -1.73 5.99 -24.74 -0.15 -1.88 16 9 C -0.11 -2.11 2.52 -88.97 -0.22 -2.34 16 10 H 0.07 1.37 8.08 -51.92 -0.42 0.95 16 11 C 0.03 0.66 4.32 -27.88 -0.12 0.54 16 12 C -0.51 -13.78 8.77 -34.44 -0.30 -14.08 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 C 0.10 1.59 3.81 -25.62 -0.10 1.49 16 21 O -0.57 -8.61 11.43 -35.23 -0.40 -9.01 16 22 H 0.11 0.68 7.51 -51.93 -0.39 0.29 16 23 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 25 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.76 7.76 -51.93 -0.40 0.36 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.13 7.97 -51.93 -0.41 0.71 16 30 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.38 5.04 9.10 45.56 0.41 5.46 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -30.84 286.59 -6.05 -36.89 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.50 Total: -0.07 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.97 Total: -17.18 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 1.52 Total: -31.01 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.40 Total: -9.01 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.84 -6.05 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238648464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.707 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds