Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46780 * 230.50515 * 3 2 1 5 5 C 1.53003 * 109.46772 * 180.02562 * 4 3 2 6 6 H 1.08995 * 110.01908 * 306.38866 * 5 4 3 7 7 C 1.54270 * 110.03420 * 67.83529 * 5 4 3 8 8 C 1.54886 * 104.19509 * 142.89260 * 7 5 4 9 9 C 1.54883 * 102.75127 * 322.05883 * 8 7 5 10 10 H 1.09008 * 110.59476 * 279.21010 * 9 8 7 11 11 C 1.52996 * 110.48836 * 156.62363 * 9 8 7 12 12 C 1.50702 * 109.47159 * 70.22095 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53875 * 110.03193 * 184.99895 * 5 4 3 21 21 O 1.42902 * 110.03273 * 0.02562 * 20 5 4 22 22 H 1.08997 * 109.47242 * 110.50851 * 3 2 1 23 23 H 1.09000 * 109.47222 * 350.50311 * 3 2 1 24 24 H 1.08993 * 109.47415 * 60.00302 * 4 3 2 25 25 H 1.09003 * 109.47389 * 299.99481 * 4 3 2 26 26 H 1.09003 * 110.48215 * 261.57142 * 7 5 4 27 27 H 1.08995 * 110.48338 * 24.07768 * 7 5 4 28 28 H 1.09006 * 110.75147 * 203.74112 * 8 7 5 29 29 H 1.08994 * 110.75489 * 80.37592 * 8 7 5 30 30 H 1.09004 * 109.47066 * 310.22298 * 11 9 8 31 31 H 1.08994 * 109.47405 * 190.22128 * 11 9 8 32 32 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 33 33 H 1.09004 * 110.03139 * 121.43094 * 20 5 4 34 34 H 0.96698 * 113.99982 * 181.37282 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9183 1.1132 5 6 4.6475 0.9195 1.1127 6 1 5.0215 -0.1028 1.1680 7 6 5.1752 1.6081 -0.1629 8 6 6.4299 2.3810 0.3139 9 6 6.0036 2.8961 1.7110 10 1 5.3932 3.7945 1.6186 11 6 7.2336 3.1728 2.5779 12 6 7.9592 4.3830 2.0487 13 1 7.5807 4.9031 1.1811 14 6 9.1028 4.8301 2.6759 15 7 9.5635 4.1970 3.7326 16 14 9.9979 6.3347 2.0246 17 1 9.2812 6.8607 0.8351 18 1 10.0406 7.3800 3.0785 19 1 11.3832 5.9599 1.6427 20 6 5.1743 1.7385 2.3042 21 8 4.0805 2.2580 3.0630 22 1 2.9712 0.3608 -0.9625 23 1 2.9718 -1.0127 0.1696 24 1 2.7544 0.5582 2.0757 25 1 2.7538 1.9318 0.9436 26 1 5.4468 0.8652 -0.9129 27 1 4.4294 2.2960 -0.5613 28 1 6.6479 3.2137 -0.3549 29 1 7.2877 1.7133 0.3935 30 1 7.8988 2.3097 2.5508 31 1 6.9199 3.3577 3.6052 32 1 10.3683 4.5113 4.1737 33 1 5.8046 1.1138 2.9372 34 1 4.3477 2.8016 3.8167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238648464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -80.669367 kcal Electronic energy + Delta-G solvation = -15065.374794 eV Core-core repulsion = 12574.930458 eV Total energy + Delta-G solvation = -2490.444336 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23380 -37.76357 -35.95874 -35.51018 -34.01635 -31.21610 -28.62835 -27.50050 -24.49908 -23.74288 -21.06804 -20.22484 -18.79200 -18.27348 -17.61644 -16.60547 -16.22033 -15.65093 -15.24687 -14.85704 -14.70686 -14.40535 -14.19271 -13.74966 -13.48173 -13.18903 -13.05247 -12.87904 -12.61630 -12.47953 -12.22766 -11.91589 -11.72151 -11.50505 -11.29901 -11.21019 -11.01058 -10.86767 -10.51669 -10.38402 -8.17109 -6.26107 1.39901 1.41515 1.53369 1.85756 1.90803 2.42550 3.16614 3.18731 3.52134 3.81589 3.91709 4.22746 4.38739 4.42833 4.63471 4.68086 4.75699 4.86161 4.91566 4.93550 5.08891 5.15240 5.30001 5.39517 5.42741 5.46654 5.54741 5.59233 5.72800 5.81434 5.91465 6.31076 6.69999 6.90349 6.93182 7.42849 8.94373 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057746 B = 0.005308 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.762703 B = 5273.358524 C = 5450.831636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.238 3.762 3 C -0.023 4.023 4 C -0.086 4.086 5 C -0.076 4.076 6 H 0.105 0.895 7 C -0.113 4.113 8 C -0.109 4.109 9 C -0.111 4.111 10 H 0.056 0.944 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.957 3.043 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.104 3.896 21 O -0.573 6.573 22 H 0.135 0.865 23 H 0.140 0.860 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.055 0.945 30 H -0.007 1.007 31 H -0.014 1.014 32 H 0.261 0.739 33 H 0.044 0.956 34 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -8.030 -7.599 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.078 4.078 3 C -0.063 4.063 4 C -0.125 4.125 5 C -0.094 4.094 6 H 0.123 0.877 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.130 4.130 10 H 0.074 0.926 11 C -0.003 4.003 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.782 3.218 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.205 1.205 20 C 0.045 3.955 21 O -0.380 6.380 22 H 0.153 0.847 23 H 0.158 0.842 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.012 0.988 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.652 -8.360 -7.935 15.034 hybrid contribution 1.622 1.429 0.823 2.313 sum -8.030 -6.931 -7.112 12.771 Atomic orbital electron populations 1.81230 1.15367 1.11390 1.11253 1.29996 0.95999 0.90893 0.90925 1.19709 0.78619 1.04849 1.03106 1.21161 0.94229 0.99320 0.97757 1.21827 0.95068 0.99626 0.92874 0.87700 1.22536 0.96178 0.99489 0.96773 1.22302 0.98058 0.99162 0.95111 1.22633 0.96211 0.97416 0.96746 0.92564 1.19047 0.92651 0.94976 0.93675 1.21661 1.09332 1.12778 1.12826 0.92524 1.25895 0.98480 1.00093 0.95257 1.70090 1.23631 1.42048 1.21710 0.85521 0.78434 0.79318 0.78531 1.18715 1.20766 1.20493 1.22619 0.86610 0.93582 0.92715 1.86376 1.34318 1.71328 1.45969 0.84706 0.84190 0.91747 0.92420 0.88348 0.90853 0.92898 0.92601 0.98822 0.99588 0.92970 0.93786 0.77026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -14.11 18.54 20.01 0.37 -13.74 16 2 C 0.24 4.71 15.43 89.44 1.38 6.09 16 3 C -0.02 -0.26 5.56 28.79 0.16 -0.10 16 4 C -0.09 -1.56 3.57 30.59 0.11 -1.45 16 5 C -0.08 -1.56 2.93 -10.07 -0.03 -1.59 16 6 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.11 -2.30 5.53 31.67 0.18 -2.12 16 8 C -0.11 -3.43 5.99 31.88 0.19 -3.24 16 9 C -0.11 -4.16 2.52 -9.72 -0.02 -4.18 16 10 H 0.06 2.24 8.08 -2.38 -0.02 2.22 16 11 C 0.03 1.66 4.32 29.85 0.13 1.79 16 12 C -0.53 -28.85 8.77 25.60 0.22 -28.62 16 13 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.00 0.01 5.46 84.66 0.46 0.47 16 15 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 16 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.10 3.12 3.81 31.32 0.12 3.24 16 21 O -0.57 -17.01 11.43 -148.98 -1.70 -18.72 16 22 H 0.14 0.91 7.51 -2.39 -0.02 0.89 16 23 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 1.34 7.65 -2.39 -0.02 1.33 16 25 H 0.06 1.27 7.91 -2.39 -0.02 1.25 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.42 7.76 -2.39 -0.02 1.40 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.86 7.97 -2.39 -0.02 1.84 16 30 H -0.01 -0.35 8.02 -2.38 -0.02 -0.37 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 33 H 0.04 1.42 7.84 -2.38 -0.02 1.40 16 34 H 0.38 10.41 9.10 -74.06 -0.67 9.74 16 Total: -1.00 -69.24 286.59 4.28 -64.95 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.41 Total: 7.01 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 2.90 Total: -29.73 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 0.66 Total: -69.02 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.70 Total: -18.72 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -69.24 4.28 -64.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238648464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.716 kcal (2) G-P(sol) polarization free energy of solvation -69.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds