Wall clock time and date at job start Mon Mar 30 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47170 * 122.38720 * 3 2 1 5 5 C 1.53004 * 109.47162 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.01538 * 54.93297 * 5 4 3 7 7 C 1.54265 * 110.03332 * 293.54499 * 5 4 3 8 8 C 1.54881 * 104.19666 * 217.05784 * 7 5 4 9 9 C 1.54892 * 102.75032 * 37.94300 * 8 7 5 10 10 H 1.08996 * 110.48879 * 80.87173 * 9 8 7 11 11 C 1.53006 * 110.48490 * 203.38151 * 9 8 7 12 12 C 1.50700 * 109.46907 * 293.54251 * 11 9 8 13 13 H 1.07995 * 120.00316 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99521 * 180.02562 * 12 11 9 15 15 N 1.31510 * 119.99879 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00332 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47266 * 89.99958 * 16 14 12 18 18 H 1.48502 * 109.46949 * 210.00180 * 16 14 12 19 19 H 1.48496 * 109.46986 * 329.99649 * 16 14 12 20 20 C 1.53880 * 110.07179 * 176.35521 * 5 4 3 21 21 O 1.42892 * 110.02996 * 0.02562 * 20 5 4 22 22 H 1.08993 * 109.47561 * 2.38244 * 3 2 1 23 23 H 1.09003 * 109.46532 * 242.38413 * 3 2 1 24 24 H 1.09002 * 109.47268 * 59.99576 * 4 3 2 25 25 H 1.09001 * 109.46730 * 299.99651 * 4 3 2 26 26 H 1.09001 * 110.48950 * 98.37596 * 7 5 4 27 27 H 1.09004 * 110.59555 * 335.79105 * 7 5 4 28 28 H 1.09006 * 110.75740 * 279.62555 * 8 7 5 29 29 H 1.09006 * 110.75936 * 156.25640 * 8 7 5 30 30 H 1.09000 * 109.47152 * 53.54744 * 11 9 8 31 31 H 1.09002 * 109.46821 * 173.54277 * 11 9 8 32 32 H 0.96997 * 120.00223 * 179.97438 * 15 14 12 33 33 H 1.09002 * 110.02770 * 238.58772 * 20 5 4 34 34 H 0.96710 * 113.99609 * 178.61983 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.7735 -1.2181 5 6 4.6477 0.7748 -1.2177 6 1 5.0215 -0.2480 -1.1696 7 6 5.1752 1.5872 -0.0172 8 6 6.4306 2.3077 -0.5683 9 6 6.0053 2.6807 -2.0102 10 1 5.3969 3.5850 -2.0066 11 6 7.2360 2.8683 -2.8998 12 6 8.0127 4.0731 -2.4350 13 1 7.6639 4.6473 -1.5894 14 6 9.1688 4.4424 -3.0893 15 7 9.8465 5.4940 -2.6840 16 14 9.7719 3.4497 -4.5523 17 1 9.1849 4.0006 -5.8001 18 1 11.2531 3.5266 -4.6260 19 1 9.3572 2.0326 -4.3937 20 6 5.1755 1.4700 -2.4850 21 8 4.0823 1.9122 -3.2920 22 1 2.9718 -1.0259 -0.0427 23 1 2.9710 0.4772 0.9106 24 1 2.7538 1.8001 -1.1753 25 1 2.7545 0.2970 -2.1287 26 1 5.4460 0.9230 0.8036 27 1 4.4316 2.3137 0.3107 28 1 7.2881 1.6348 -0.5803 29 1 6.6490 3.2030 0.0138 30 1 7.8678 1.9823 -2.8375 31 1 6.9188 3.0165 -3.9321 32 1 10.6600 5.7536 -3.1441 33 1 5.8056 0.7846 -3.0518 34 1 4.3503 2.3776 -4.0963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238650268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:32 Heat of formation + Delta-G solvation = -56.613703 kcal Electronic energy + Delta-G solvation = -15113.566186 eV Core-core repulsion = 12624.164982 eV Total energy + Delta-G solvation = -2489.401204 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.15155 -36.85677 -34.85004 -34.03212 -32.41341 -30.11485 -27.62841 -26.11999 -23.25273 -21.97587 -19.73511 -19.13901 -17.57150 -17.23985 -16.33452 -15.45648 -14.70000 -14.36055 -14.12929 -13.72366 -13.53237 -13.35689 -12.81295 -12.49150 -12.40662 -12.10288 -11.81553 -11.48610 -11.27558 -11.12202 -10.87724 -10.68950 -10.34955 -10.27647 -9.90409 -9.78819 -9.64277 -9.30420 -9.00266 -8.57399 -6.07587 -4.05531 2.68461 2.70986 3.26318 3.34783 3.36315 3.91642 4.40961 4.55974 4.78356 4.84523 5.13025 5.17002 5.25418 5.30166 5.43746 5.72840 5.76540 5.81123 5.83835 5.98308 6.13927 6.24613 6.30478 6.34968 6.58696 6.75748 6.78982 6.88709 7.14099 7.36750 7.48714 7.74939 8.00977 8.50780 8.98057 9.54902 11.05852 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.056138 B = 0.005651 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.650972 B = 4953.656742 C = 5173.182425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.212 3.788 3 C -0.032 4.032 4 C -0.093 4.093 5 C -0.082 4.082 6 H 0.078 0.922 7 C -0.126 4.126 8 C -0.105 4.105 9 C -0.106 4.106 10 H 0.075 0.925 11 C -0.008 4.008 12 C -0.515 4.515 13 H 0.073 0.927 14 C 0.066 3.934 15 N -0.903 5.903 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.101 3.899 21 O -0.570 6.570 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 -10.950 3.081 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.105 4.105 3 C -0.072 4.072 4 C -0.132 4.132 5 C -0.101 4.101 6 H 0.096 0.904 7 C -0.164 4.164 8 C -0.142 4.142 9 C -0.124 4.124 10 H 0.093 0.907 11 C -0.045 4.045 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.191 1.191 20 C 0.042 3.958 21 O -0.376 6.376 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.287 -11.134 3.532 15.565 hybrid contribution 1.368 -0.082 -1.280 1.875 sum -8.919 -11.215 2.252 14.506 Atomic orbital electron populations 1.81203 1.13289 1.09204 1.09098 1.29390 0.95487 0.92821 0.92816 1.19513 0.81154 1.04031 1.02543 1.21307 0.95230 1.01025 0.95633 1.21811 0.94424 0.99222 0.94654 0.90384 1.22574 0.98619 0.98733 0.96449 1.22322 0.95958 1.00034 0.95911 1.22583 0.97386 0.96593 0.95887 0.90651 1.19649 0.92998 0.97606 0.94287 1.21095 1.07504 1.10576 1.16160 0.90918 1.25040 0.96548 0.94815 0.97125 1.69908 1.17169 1.25806 1.41355 0.86813 0.77917 0.81292 0.83429 1.20380 1.21429 1.19120 1.22659 0.86836 0.95503 0.90772 1.86402 1.34330 1.78270 1.38582 0.87637 0.87395 0.90580 0.90761 0.91868 0.91551 0.91603 0.91249 0.96545 0.97439 0.92759 0.92781 0.77601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.34 18.54 42.15 0.78 -5.56 16 2 C 0.21 2.32 15.43 -20.76 -0.32 2.00 16 3 C -0.03 -0.24 5.54 -29.52 -0.16 -0.41 16 4 C -0.09 -0.95 3.56 -26.73 -0.10 -1.05 16 5 C -0.08 -0.94 2.94 -89.50 -0.26 -1.20 16 6 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 7 C -0.13 -1.48 5.46 -25.08 -0.14 -1.62 16 8 C -0.10 -1.69 5.83 -24.74 -0.14 -1.83 16 9 C -0.11 -1.88 2.56 -88.96 -0.23 -2.10 16 10 H 0.08 1.44 8.08 -51.93 -0.42 1.02 16 11 C -0.01 -0.18 3.40 -27.88 -0.09 -0.27 16 12 C -0.52 -13.90 9.23 -34.44 -0.32 -14.22 16 13 H 0.07 2.12 7.87 -52.49 -0.41 1.71 16 14 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 15 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 16 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 20 C 0.10 1.45 3.81 -25.61 -0.10 1.36 16 21 O -0.57 -7.98 11.44 -35.23 -0.40 -8.39 16 22 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.11 0.66 7.46 -51.93 -0.39 0.27 16 24 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 25 H 0.07 0.82 7.71 -51.93 -0.40 0.42 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 28 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 29 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.02 0.36 7.16 -51.93 -0.37 -0.01 16 31 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 34 H 0.38 4.51 9.10 45.56 0.41 4.92 16 LS Contribution 282.73 15.07 4.26 4.26 Total: -1.00 -31.50 282.73 -5.68 -37.18 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.46 Total: 0.21 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.96 Total: -17.59 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 1.55 Total: -31.97 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.40 Total: -8.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.50 -5.68 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238650268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.433 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds