Wall clock time and date at job start Mon Mar 30 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47170 * 122.38720 * 3 2 1 5 5 C 1.53004 * 109.47162 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.01538 * 54.93297 * 5 4 3 7 7 C 1.54265 * 110.03332 * 293.54499 * 5 4 3 8 8 C 1.54881 * 104.19666 * 217.05784 * 7 5 4 9 9 C 1.54892 * 102.75032 * 37.94300 * 8 7 5 10 10 H 1.08996 * 110.48879 * 80.87173 * 9 8 7 11 11 C 1.53006 * 110.48490 * 203.38151 * 9 8 7 12 12 C 1.50700 * 109.46907 * 293.54251 * 11 9 8 13 13 H 1.07995 * 120.00316 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99521 * 180.02562 * 12 11 9 15 15 N 1.31510 * 119.99879 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00332 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47266 * 89.99958 * 16 14 12 18 18 H 1.48502 * 109.46949 * 210.00180 * 16 14 12 19 19 H 1.48496 * 109.46986 * 329.99649 * 16 14 12 20 20 C 1.53880 * 110.07179 * 176.35521 * 5 4 3 21 21 O 1.42892 * 110.02996 * 0.02562 * 20 5 4 22 22 H 1.08993 * 109.47561 * 2.38244 * 3 2 1 23 23 H 1.09003 * 109.46532 * 242.38413 * 3 2 1 24 24 H 1.09002 * 109.47268 * 59.99576 * 4 3 2 25 25 H 1.09001 * 109.46730 * 299.99651 * 4 3 2 26 26 H 1.09001 * 110.48950 * 98.37596 * 7 5 4 27 27 H 1.09004 * 110.59555 * 335.79105 * 7 5 4 28 28 H 1.09006 * 110.75740 * 279.62555 * 8 7 5 29 29 H 1.09006 * 110.75936 * 156.25640 * 8 7 5 30 30 H 1.09000 * 109.47152 * 53.54744 * 11 9 8 31 31 H 1.09002 * 109.46821 * 173.54277 * 11 9 8 32 32 H 0.96997 * 120.00223 * 179.97438 * 15 14 12 33 33 H 1.09002 * 110.02770 * 238.58772 * 20 5 4 34 34 H 0.96710 * 113.99609 * 178.61983 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.7735 -1.2181 5 6 4.6477 0.7748 -1.2177 6 1 5.0215 -0.2480 -1.1696 7 6 5.1752 1.5872 -0.0172 8 6 6.4306 2.3077 -0.5683 9 6 6.0053 2.6807 -2.0102 10 1 5.3969 3.5850 -2.0066 11 6 7.2360 2.8683 -2.8998 12 6 8.0127 4.0731 -2.4350 13 1 7.6639 4.6473 -1.5894 14 6 9.1688 4.4424 -3.0893 15 7 9.8465 5.4940 -2.6840 16 14 9.7719 3.4497 -4.5523 17 1 9.1849 4.0006 -5.8001 18 1 11.2531 3.5266 -4.6260 19 1 9.3572 2.0326 -4.3937 20 6 5.1755 1.4700 -2.4850 21 8 4.0823 1.9122 -3.2920 22 1 2.9718 -1.0259 -0.0427 23 1 2.9710 0.4772 0.9106 24 1 2.7538 1.8001 -1.1753 25 1 2.7545 0.2970 -2.1287 26 1 5.4460 0.9230 0.8036 27 1 4.4316 2.3137 0.3107 28 1 7.2881 1.6348 -0.5803 29 1 6.6490 3.2030 0.0138 30 1 7.8678 1.9823 -2.8375 31 1 6.9188 3.0165 -3.9321 32 1 10.6600 5.7536 -3.1441 33 1 5.8056 0.7846 -3.0518 34 1 4.3503 2.3776 -4.0963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238650268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:32 Heat of formation + Delta-G solvation = -78.148742 kcal Electronic energy + Delta-G solvation = -15114.500016 eV Core-core repulsion = 12624.164982 eV Total energy + Delta-G solvation = -2490.335033 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26063 -37.77056 -35.96784 -35.48548 -34.06889 -31.58849 -28.65732 -27.68227 -24.31501 -23.56679 -21.02282 -20.25301 -19.05467 -18.31631 -17.76161 -16.40484 -16.20121 -15.71305 -15.27108 -15.00148 -14.66507 -14.46020 -14.43312 -13.79709 -13.55483 -13.21691 -13.15997 -12.91356 -12.53973 -12.48010 -11.99891 -11.87107 -11.67364 -11.53153 -11.31126 -11.21215 -11.07643 -10.93899 -10.70910 -10.40155 -8.24832 -6.27716 1.37810 1.39471 1.50670 1.85678 1.90587 2.38771 3.10887 3.18587 3.52683 3.78411 3.90536 4.21450 4.36456 4.40926 4.60934 4.64042 4.73770 4.84246 4.86476 4.92144 5.06693 5.08634 5.18294 5.31593 5.39339 5.42632 5.52110 5.56272 5.70003 5.73149 5.77962 6.35200 6.69872 6.80770 6.97544 7.36463 8.92154 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.056138 B = 0.005651 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.650972 B = 4953.656742 C = 5173.182425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.238 3.762 3 C -0.024 4.024 4 C -0.086 4.086 5 C -0.076 4.076 6 H 0.110 0.890 7 C -0.114 4.114 8 C -0.110 4.110 9 C -0.108 4.108 10 H 0.052 0.948 11 C -0.006 4.006 12 C -0.519 4.519 13 H 0.030 0.970 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.242 1.242 20 C 0.105 3.895 21 O -0.574 6.574 22 H 0.142 0.858 23 H 0.132 0.868 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 -13.908 2.785 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.079 4.079 3 C -0.064 4.064 4 C -0.125 4.125 5 C -0.094 4.094 6 H 0.128 0.872 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.127 4.127 10 H 0.070 0.930 11 C -0.043 4.043 12 C -0.557 4.557 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.597 5.597 16 Si 0.773 3.227 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.166 1.166 20 C 0.046 3.954 21 O -0.381 6.381 22 H 0.160 0.840 23 H 0.150 0.850 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.625 -14.102 3.236 17.951 hybrid contribution 1.496 0.959 -1.150 2.117 sum -9.130 -13.143 2.086 16.138 Atomic orbital electron populations 1.81233 1.15400 1.11486 1.11169 1.30012 0.96022 0.90870 0.90946 1.19719 0.78593 1.05986 1.02083 1.21165 0.94371 1.00246 0.96730 1.21835 0.94962 1.00272 0.92327 0.87163 1.22538 0.96061 0.98978 0.97580 1.22301 0.98281 0.99335 0.94867 1.22526 0.95982 0.97693 0.96505 0.92987 1.19611 0.94227 0.95151 0.95296 1.21455 1.07876 1.11722 1.14627 0.95173 1.26035 0.96901 0.96037 1.00627 1.70080 1.18023 1.28162 1.43437 0.85676 0.77104 0.80699 0.79246 1.19501 1.21466 1.16569 1.22630 0.86726 0.93732 0.92299 1.86411 1.34304 1.78328 1.39018 0.83994 0.85034 0.92688 0.91380 0.88420 0.91381 0.91958 0.94215 0.95965 0.96811 0.92750 0.92245 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.91 18.54 20.00 0.37 -13.53 16 2 C 0.24 4.58 15.43 89.44 1.38 5.96 16 3 C -0.02 -0.25 5.54 28.79 0.16 -0.09 16 4 C -0.09 -1.45 3.56 30.59 0.11 -1.34 16 5 C -0.08 -1.40 2.94 -10.07 -0.03 -1.43 16 6 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 7 C -0.11 -2.30 5.46 31.67 0.17 -2.13 16 8 C -0.11 -3.47 5.83 31.88 0.19 -3.29 16 9 C -0.11 -3.79 2.56 -9.72 -0.02 -3.81 16 10 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 11 C -0.01 -0.24 3.40 29.85 0.10 -0.14 16 12 C -0.52 -28.83 9.23 25.60 0.24 -28.59 16 13 H 0.03 1.87 7.87 -2.91 -0.02 1.85 16 14 C 0.00 0.00 5.47 84.65 0.46 0.46 16 15 N -0.96 -59.48 13.96 21.45 0.30 -59.18 16 16 Si 0.95 42.99 27.47 68.60 1.88 44.88 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 20 C 0.11 2.75 3.81 31.32 0.12 2.87 16 21 O -0.57 -14.93 11.44 -148.98 -1.70 -16.64 16 22 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.13 0.88 7.46 -2.39 -0.02 0.87 16 24 H 0.05 1.17 7.90 -2.39 -0.02 1.15 16 25 H 0.07 1.27 7.71 -2.39 -0.02 1.25 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.37 7.79 -2.38 -0.02 1.35 16 28 H 0.06 1.98 8.02 -2.38 -0.02 1.97 16 29 H 0.04 1.45 8.08 -2.38 -0.02 1.43 16 30 H 0.02 0.94 7.16 -2.39 -0.02 0.92 16 31 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.06 1.52 7.84 -2.39 -0.02 1.51 16 34 H 0.38 8.59 9.10 -74.05 -0.67 7.91 16 Total: -1.00 -72.06 282.73 4.08 -67.98 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.35 Total: 8.02 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 2.87 Total: -31.53 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: 0.67 Total: -72.71 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.70 Total: -16.64 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Total: -72.06 4.08 -67.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238650268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.164 kcal (2) G-P(sol) polarization free energy of solvation -72.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds