Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00092 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99546 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99999 * 180.02562 * 12 11 10 15 15 H 1.09004 * 110.66756 * 303.22020 * 14 12 11 16 16 C 1.54889 * 110.75616 * 179.97438 * 14 12 11 17 17 C 1.54265 * 104.19503 * 279.62269 * 16 14 12 18 18 H 1.09003 * 117.41540 * 116.36883 * 17 16 14 19 19 C 1.52998 * 118.19699 * 271.00088 * 17 16 14 20 20 C 1.53877 * 106.59639 * 336.38781 * 17 16 14 21 21 H 1.09006 * 121.32891 * 138.63110 * 20 17 16 22 22 C 1.54266 * 106.59895 * 0.02562 * 20 17 16 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 0.96996 * 119.99802 * 359.97438 * 11 10 9 29 29 H 1.09002 * 110.48978 * 38.29673 * 16 14 12 30 30 H 1.08999 * 110.49063 * 160.94029 * 16 14 12 31 31 H 1.09007 * 117.46105 * 201.21341 * 19 17 16 32 32 H 1.09000 * 117.46133 * 346.01350 * 19 17 16 33 33 H 1.09002 * 110.48199 * 264.92755 * 22 20 17 34 34 H 1.08995 * 110.48531 * 142.28728 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0020 15 1 0.7562 -7.4571 0.8505 16 6 2.4133 -8.6026 -0.0019 17 6 2.8473 -8.7367 -1.4761 18 1 3.9002 -8.5735 -1.7062 19 6 2.0077 -9.6220 -2.3992 20 6 1.7344 -8.0935 -2.3221 21 1 1.9674 -7.4639 -3.1809 22 6 0.6633 -7.5905 -1.3324 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 0.5430 -4.9308 -0.0011 29 1 3.2748 -8.3915 0.6317 30 1 1.9070 -9.5088 0.3307 31 1 2.4837 -9.9977 -3.3050 32 1 1.2889 -10.2956 -1.9326 33 1 -0.1258 -8.3332 -1.2144 34 1 0.2477 -6.6412 -1.6701 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250623405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = -35.548460 kcal Electronic energy + Delta-G solvation = -15003.319474 eV Core-core repulsion = 12514.831728 eV Total energy + Delta-G solvation = -2488.487747 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30085 -38.02548 -34.99637 -33.11385 -31.89904 -29.30355 -28.23897 -24.78666 -23.20234 -21.70227 -21.10682 -19.69018 -19.40279 -17.08146 -16.53967 -16.09892 -15.30865 -15.07898 -14.19783 -13.75266 -13.51139 -13.24497 -13.02522 -12.59456 -12.20664 -11.78065 -11.63552 -11.46586 -11.23580 -11.01030 -10.91510 -10.43094 -10.17776 -10.07067 -9.99254 -9.86635 -9.36778 -8.67278 -8.54077 -8.36487 -6.44753 -4.14589 2.98559 3.41868 3.45494 3.48648 3.61462 3.68066 4.39854 4.50960 4.53394 4.72455 5.00764 5.15432 5.27681 5.33571 5.34816 5.38359 5.51185 5.61089 5.63898 5.81771 6.00719 6.09468 6.14661 6.21245 6.23033 6.27928 6.60677 6.84452 7.24897 7.34475 7.96951 8.09298 8.37900 8.64372 8.79615 9.57401 10.96405 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060443 B = 0.004914 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.136726 B = 5697.117078 C = 5803.828863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.053 0.947 9 C -0.001 4.001 10 C 0.130 3.870 11 N -0.725 5.725 12 C 0.516 3.484 13 O -0.546 6.546 14 C -0.118 4.118 15 H 0.100 0.900 16 C -0.077 4.077 17 C -0.152 4.152 18 H 0.109 0.891 19 C -0.157 4.157 20 C -0.172 4.172 21 H 0.109 0.891 22 C -0.083 4.083 23 H 0.268 0.732 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.395 0.605 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -17.214 -2.059 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.902 3.098 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.641 4.641 8 H 0.071 0.929 9 C -0.038 4.038 10 C 0.007 3.993 11 N -0.375 5.375 12 C 0.301 3.699 13 O -0.424 6.424 14 C -0.139 4.139 15 H 0.118 0.882 16 C -0.114 4.114 17 C -0.170 4.170 18 H 0.127 0.873 19 C -0.194 4.194 20 C -0.191 4.191 21 H 0.127 0.873 22 C -0.121 4.121 23 H 0.078 0.922 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.781 -15.526 -2.055 15.681 hybrid contribution -0.268 -1.580 -0.038 1.603 sum 0.513 -17.106 -2.093 17.241 Atomic orbital electron populations 1.70776 1.06889 1.30550 1.46466 1.25885 0.96491 1.02815 0.93476 0.83473 0.74692 0.74812 0.76858 1.21346 1.20927 1.21345 1.21921 0.94557 0.91399 1.56206 0.92871 1.19453 0.94867 0.92977 0.96505 1.21528 0.95664 0.81205 1.00876 1.46322 1.10349 1.06606 1.74255 1.20320 0.88119 0.85232 0.76192 1.90648 1.14023 1.87712 1.49969 1.22489 0.98034 0.93746 0.99668 0.88208 1.21797 0.98792 0.95733 0.95112 1.23189 0.97026 1.04193 0.92575 0.87309 1.23446 1.02698 0.92079 1.01148 1.23611 0.99151 0.95005 1.01285 0.87256 1.21900 0.96436 1.01714 0.92047 0.92159 0.96891 0.96875 0.92548 0.92520 0.77136 0.89922 0.91042 0.88669 0.89022 0.90437 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.45 13.65 55.43 0.76 -26.69 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.60 -17.10 9.11 -34.44 -0.31 -17.41 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.00 -0.02 4.40 -27.88 -0.12 -0.14 16 10 C 0.13 2.83 5.61 -4.04 -0.02 2.81 16 11 N -0.73 -12.79 5.45 -60.30 -0.33 -13.12 16 12 C 0.52 8.80 6.82 -10.99 -0.07 8.73 16 13 O -0.55 -11.35 15.52 5.55 0.09 -11.26 16 14 C -0.12 -1.46 3.45 -89.80 -0.31 -1.77 16 15 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.08 -0.90 5.80 -25.07 -0.15 -1.05 16 17 C -0.15 -1.83 6.46 -89.50 -0.58 -2.40 16 18 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 19 C -0.16 -1.52 10.21 -25.42 -0.26 -1.78 16 20 C -0.17 -2.02 6.86 -88.19 -0.61 -2.63 16 21 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 22 C -0.08 -0.91 6.12 -25.09 -0.15 -1.06 16 23 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 24 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 25 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.40 5.98 8.47 -40.82 -0.35 5.63 16 29 H 0.08 1.10 7.47 -51.93 -0.39 0.72 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 LS Contribution 284.31 15.07 4.28 4.28 Total: -1.00 -32.10 284.31 -8.25 -40.34 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.28 Total: 2.59 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.68 Total: -16.31 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.43 Total: -39.81 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.10 -8.25 -40.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250623405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.796 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds