Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00092 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99546 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99999 * 180.02562 * 12 11 10 15 15 H 1.09004 * 110.66756 * 303.22020 * 14 12 11 16 16 C 1.54889 * 110.75616 * 179.97438 * 14 12 11 17 17 C 1.54265 * 104.19503 * 279.62269 * 16 14 12 18 18 H 1.09003 * 117.41540 * 116.36883 * 17 16 14 19 19 C 1.52998 * 118.19699 * 271.00088 * 17 16 14 20 20 C 1.53877 * 106.59639 * 336.38781 * 17 16 14 21 21 H 1.09006 * 121.32891 * 138.63110 * 20 17 16 22 22 C 1.54266 * 106.59895 * 0.02562 * 20 17 16 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 0.96996 * 119.99802 * 359.97438 * 11 10 9 29 29 H 1.09002 * 110.48978 * 38.29673 * 16 14 12 30 30 H 1.08999 * 110.49063 * 160.94029 * 16 14 12 31 31 H 1.09007 * 117.46105 * 201.21341 * 19 17 16 32 32 H 1.09000 * 117.46133 * 346.01350 * 19 17 16 33 33 H 1.09002 * 110.48199 * 264.92755 * 22 20 17 34 34 H 1.08995 * 110.48531 * 142.28728 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0020 15 1 0.7562 -7.4571 0.8505 16 6 2.4133 -8.6026 -0.0019 17 6 2.8473 -8.7367 -1.4761 18 1 3.9002 -8.5735 -1.7062 19 6 2.0077 -9.6220 -2.3992 20 6 1.7344 -8.0935 -2.3221 21 1 1.9674 -7.4639 -3.1809 22 6 0.6633 -7.5905 -1.3324 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 0.5430 -4.9308 -0.0011 29 1 3.2748 -8.3915 0.6317 30 1 1.9070 -9.5088 0.3307 31 1 2.4837 -9.9977 -3.3050 32 1 1.2889 -10.2956 -1.9326 33 1 -0.1258 -8.3332 -1.2144 34 1 0.2477 -6.6412 -1.6701 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250623405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = -55.959874 kcal Electronic energy + Delta-G solvation = -15004.204579 eV Core-core repulsion = 12514.831728 eV Total energy + Delta-G solvation = -2489.372852 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46981 -39.23943 -36.80689 -35.05667 -33.00855 -31.09710 -29.15667 -26.63672 -24.60858 -23.20309 -22.44751 -20.73062 -20.58915 -18.93934 -17.96588 -17.24583 -16.80785 -16.52655 -15.68282 -15.54292 -15.06193 -14.55116 -14.10215 -13.97678 -13.68358 -13.61695 -12.89483 -12.73855 -12.36174 -12.31509 -12.20481 -12.07817 -11.90558 -11.81979 -11.10554 -10.92394 -10.78417 -10.59850 -10.45340 -10.10105 -8.74326 -6.45425 1.52791 1.61045 1.62905 1.79828 2.22598 2.55724 2.66072 3.11326 3.53608 3.60215 3.74328 3.98458 4.20600 4.29238 4.30677 4.39290 4.45308 4.50185 4.63254 4.64860 4.80008 4.88767 4.97031 5.09490 5.13892 5.23923 5.27527 5.30103 5.36347 5.41310 5.91466 6.11310 6.48201 6.61387 7.25220 7.34735 8.68069 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060443 B = 0.004914 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.136726 B = 5697.117078 C = 5803.828863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.120 2.880 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.625 4.625 8 H 0.047 0.953 9 C 0.008 3.992 10 C 0.148 3.852 11 N -0.720 5.720 12 C 0.512 3.488 13 O -0.588 6.588 14 C -0.111 4.111 15 H 0.131 0.869 16 C -0.074 4.074 17 C -0.174 4.174 18 H 0.085 0.915 19 C -0.125 4.125 20 C -0.192 4.192 21 H 0.092 0.908 22 C -0.077 4.077 23 H 0.259 0.741 24 H 0.007 0.993 25 H 0.006 0.994 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.410 0.590 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -18.526 -1.979 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.229 4.229 3 Si 0.941 3.059 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.663 4.663 8 H 0.066 0.934 9 C -0.030 4.030 10 C 0.024 3.976 11 N -0.371 5.371 12 C 0.300 3.700 13 O -0.468 6.468 14 C -0.132 4.132 15 H 0.149 0.851 16 C -0.111 4.111 17 C -0.193 4.193 18 H 0.103 0.897 19 C -0.162 4.162 20 C -0.210 4.210 21 H 0.111 0.889 22 C -0.114 4.114 23 H 0.069 0.931 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.246 0.754 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.098 -16.877 -1.974 16.992 hybrid contribution 0.031 -1.220 -0.087 1.223 sum -0.068 -18.096 -2.060 18.213 Atomic orbital electron populations 1.70895 1.07724 1.30112 1.48119 1.27360 0.96600 1.06545 0.92365 0.82893 0.74085 0.71051 0.77905 1.19660 1.20444 1.19831 1.22336 0.94702 0.93155 1.56131 0.93426 1.19295 0.94902 0.93137 0.95654 1.21003 0.94745 0.82396 0.99431 1.46148 1.10974 1.05518 1.74472 1.21281 0.87898 0.86381 0.74430 1.90631 1.16195 1.88364 1.51623 1.22562 0.98232 0.90550 1.01880 0.85097 1.21817 0.98114 0.96695 0.94486 1.23203 0.96203 1.06533 0.93332 0.89651 1.23546 1.01391 0.90785 1.00478 1.23715 0.99444 0.96787 1.01085 0.88937 1.21928 0.96612 1.02412 0.90493 0.93142 0.97491 0.97596 0.94171 0.93865 0.75442 0.92242 0.87651 0.87730 0.86593 0.87066 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.65 21.45 0.29 -56.07 16 2 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 3 Si 1.12 50.21 29.90 68.60 2.05 52.26 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.63 -35.88 9.11 25.60 0.23 -35.64 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.01 0.38 4.40 29.85 0.13 0.51 16 10 C 0.15 6.62 5.61 86.38 0.48 7.10 16 11 N -0.72 -25.25 5.45 -463.07 -2.53 -27.78 16 12 C 0.51 17.29 6.82 87.65 0.60 17.89 16 13 O -0.59 -24.99 15.52 -3.04 -0.05 -25.04 16 14 C -0.11 -2.49 3.45 -10.26 -0.04 -2.53 16 15 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 16 C -0.07 -1.59 5.80 31.67 0.18 -1.40 16 17 C -0.17 -4.01 6.46 -10.07 -0.07 -4.07 16 18 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 19 C -0.13 -2.05 10.21 31.44 0.32 -1.73 16 20 C -0.19 -4.21 6.86 -9.22 -0.06 -4.27 16 21 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 22 C -0.08 -1.47 6.12 31.66 0.19 -1.27 16 23 H 0.26 15.61 7.22 -92.71 -0.67 14.94 16 24 H 0.01 0.35 8.01 -2.39 -0.02 0.34 16 25 H 0.01 0.30 8.01 -2.39 -0.02 0.28 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.89 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.41 12.02 8.47 -92.71 -0.79 11.23 16 29 H 0.06 1.56 7.47 -2.39 -0.02 1.54 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.43 7.96 -2.39 -0.02 1.41 16 Total: -1.00 -70.14 284.31 2.61 -67.53 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.39 Total: 15.79 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 2.44 Total: -26.69 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.23 Total: -83.85 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -70.14 2.61 -67.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250623405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.568 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds